Identification of immunoglobulins using Chou's pseudo amino acid composition with feature selection technique

A novel features ranking metric with application to scalable visual and bioinformatics data classification

(2016) Quan Zou et al.   NEUROCOMPUTING

Prediction and analysis of cell-penetrating peptides using pseudo-amino acid composition and random forest models

(2015) Lei Chen et al.   AMINO ACIDS

iRNA-Methyl: Identifying N6-methyladenosine sites using pseudo nucleotide composition

(2015) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

MultiP-SChlo: multi-label protein subchloroplast localization prediction with Chou’s pseudo amino acid composition and a novel multi-label classifier

(2015) Xiao Wang et al.   BIOINFORMATICS

Identification of Heat Shock Protein families and J-protein types by incorporating Dipeptide Composition into Chou's general PseAAC

(2015) Saeed Ahmad et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Enhanced Protein Fold Prediction Method Through a Novel Feature Extraction Technique

(2015) Leyi Wei et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

iMiRNA-PseDPC: microRNA precursor identification with a pseudo distance-pair composition approach

(2015) Bin Liu et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

DSPMP: Discriminating secretory proteins of malaria parasite by hybridizing different descriptors of Chou's pseudo amino acid patterns

(2015) Guo-Liang Fan et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Predicting the subcellular localization of mycobacterial proteins by incorporating the optimal tripeptides into the general form of pseudo amino acid composition

(2015) Pan-Pan Zhu et al.   Molecular BioSystems

LYRA, a webserver for lymphocyte receptor structural modeling

(2015) Michael Schantz Klausen et al.   NUCLEIC ACIDS RESEARCH

Identify Secretory Protein of Malaria Parasite with Modified Quadratic Discriminant Algorithm and Amino Acid Composition

(2015) Yong-E Feng   Interdisciplinary Sciences-Computational Life Sciences

Identification of mitochondrial proteins of malaria parasite using analysis of variance

(2014) Hui Ding et al.   AMINO ACIDS

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

(2014) Shou-Hui Guo et al.   BIOINFORMATICS

nDNA-prot: identification of DNA-binding proteins based on unbalanced classification

(2014) Li Song et al.   BMC BIOINFORMATICS

Using distances between Top-n-gram and residue pairs for protein remote homology detection

(2014) Bin Liu et al.   BMC BIOINFORMATICS

Discriminating protein structure classes by incorporating Pseudo Average Chemical Shift to Chou's general PseAAC and Support Vector Machine

(2014) Maqsood Hayat et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Prediction of CpG island methylation status by integrating DNA physicochemical properties

(2014) Pengmian Feng et al.   GENOMICS

Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

(2014) Hui Ding et al.   Molecular BioSystems

Antibody modeling using the Prediction of ImmunoGlobulin Structure (PIGS) web server

(2014) Paolo Marcatili et al.   Nature Protocols

iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition

(2014) Hao Lin et al.   NUCLEIC ACIDS RESEARCH

iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition

(2014) Bin Liu et al.   PLoS One

Identification of inflammatory bowel disease-related proteins using a reverse k-nearest neighbor search

(2014) Apichat Suratanee et al.   Journal of Bioinformatics and Computational Biology

iHSP-PseRAAAC: Identifying the heat shock protein families using pseudo reduced amino acid alphabet composition

(2013) Peng-Mian Feng et al.   ANALYTICAL BIOCHEMISTRY

CPPpred: prediction of cell penetrating peptides

(2013) Thérèse A. Holton et al.   BIOINFORMATICS

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection

(2013) Bin Liu et al.   BIOINFORMATICS

In Silico ADMET Prediction: Recent Advances, Current Challenges and Future Trends

(2013) Feixiong Cheng et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Improved and Promising Identification of Human MicroRNAs by Incorporating a High-Quality Negative Set

(2013) Leyi Wei et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

LibD3C: Ensemble classifiers with a clustering and dynamic selection strategy

(2013) Chen Lin et al.   NEUROCOMPUTING

Hierarchical Classification of Protein Folds Using a Novel Ensemble Classifier

(2013) Chen Lin et al.   PLoS One

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

The TIM and TAM Families of Phosphatidylserine Receptors Mediate Dengue Virus Entry

(2012) Laurent Meertens et al.   Cell Host & Microbe

Identification of mycobacterial membrane proteins and their types using over-represented tripeptide compositions

(2012) Chen Ding et al.   Journal of Proteomics

Prediction of Allergenic Proteins by Means of the Concept of Chou's Pseudo Amino Acid Composition and a Machine Learning Approach

(2012) Hassan Mohabatkar et al.   Medicinal Chemistry

Prediction of chemical–protein interactions: multitarget-QSAR versus computational chemogenomic methods

(2012) Feixiong Cheng et al.   Molecular BioSystems

A Global Characterization and Identification of Multifunctional Enzymes

(2012) Xian-Ying Cheng et al.   PLoS One

Discriminating Outer Membrane Proteins with Fuzzy K-Nearest Neighbor Algorithms Based on the General Form of Chou’s PseAAC

(2012) Maqsood Hayat et al.   PROTEIN AND PEPTIDE LETTERS

Wavelet images and Chou’s pseudo amino acid composition for protein classification

(2011) Loris Nanni et al.   AMINO ACIDS

Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information

(2011) Loris Nanni et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

T-cell immunoglobulin and mucin domain 1 (TIM-1) is a receptor for Zaire Ebolavirus and Lake Victoria Marburgvirus

(2011) A. S. Kondratowicz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identify Golgi Protein Types with Modified Mahalanobis Discriminant Algorithm and Pseudo Amino Acid Composition

(2011) Hui Ding et al.   PROTEIN AND PEPTIDE LETTERS

Prediction of Cell Penetrating Peptides by Support Vector Machines

(2011) William S. Sanders et al.   PLoS Computational Biology

A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction

(2010) Sitanshu Sekhar Sahu et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Prediction of Cell-Penetrating Peptides Using Artificial Neural Networks

(2010) Dimitar A. Dobchev et al.   Current Computer-Aided Drug Design

Prediction of thermophilic proteins using feature selection technique

(2010) Hao Lin et al.   JOURNAL OF MICROBIOLOGICAL METHODS

In vivo characterization of activatable cell penetrating peptides for targeting protease activity in cancer

(2009) Emilia S. Olson et al.   Integrative Biology

Extensions to amino acid description

(2009) Johan Gottfries et al.   MOLECULAR DIVERSITY

Prediction of Cell Wall Lytic Enzymes Using Chous Amphiphilic Pseudo Amino Acid Composition

(2009) Hui Ding et al.   PROTEIN AND PEPTIDE LETTERS

PIGS: automatic prediction of antibody structures

(2008) P. Marcatili et al.   BIOINFORMATICS

Cell penetrating peptide inhibitors of Nuclear Factor-kappa B

(2008) J. S. Orange et al.   CELLULAR AND MOLECULAR LIFE SCIENCES