Atlantic Salmon (Salmo salar L.) Gastrointestinal Microbial Community Dynamics in Relation to Digesta Properties and Diet

The effect of diet and environmental temperature on the faecal microbiota of farmed Tasmanian Atlantic Salmon (Salmo salarL.)

(2015) Christina Neuman et al.   AQUACULTURE RESEARCH

Substitution of dietary fish oil with plant oils is associated with shortened mid intestinal folds in Atlantic salmon (Salmo salar)

(2014) Torfinn Moldal et al.   BMC Veterinary Research

The gut microbiota and the metabolic health of the host

(2014) Susan A. Joyce et al.   CURRENT OPINION IN GASTROENTEROLOGY

Evaluation of the effect of commercially available plant and animal protein sources in diets for Atlantic salmon (Salmo salar L.): digestive and metabolic investigations

(2014) Mali Hartviksen et al.   FISH PHYSIOLOGY AND BIOCHEMISTRY

Pyrosequencing-based characterization of gastrointestinal bacteria of Atlantic salmon (Salmo salarL.) within a commercial mariculture system

(2014) K.Z. Zarkasi et al.   JOURNAL OF APPLIED MICROBIOLOGY

Population Dynamics of Vibrio and Pseudomonas Species Isolated from Farmed Tasmanian Atlantic Salmon (Salmo salar L.): A Seasonal Study

(2014) Eva Hatje et al.   MICROBIAL ECOLOGY

Intestinal microbiota in fishes: what's known and what's not

(2014) Kendall D. Clements et al.   MOLECULAR ECOLOGY

Effects of Cortisol on the Intestinal Mucosal Immune Response during Cohabitant Challenge with IPNV in Atlantic Salmon (Salmo salar)

(2014) Lars Niklasson et al.   PLoS One

Links between diet, gut microbiota composition and gut metabolism

(2014) Harry J. Flint et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

Foreword

(2014) Koen Venema   Beneficial Microbes

Experimental Approaches for Defining Functional Roles of Microbes in the Human Gut

(2013) Gautam Dantas et al.   Annual Review of Microbiology

Transcriptional responses to temperature and low oxygen stress in Atlantic salmon studied with next-generation sequencing technology

(2013) Pål A Olsvik et al.   BMC GENOMICS

Next generation sequencing shows high variation of the intestinal microbial species composition in Atlantic cod caught at a single location

(2013) Bastiaan Star et al.   BMC MICROBIOLOGY

Antimicrobial activity, antibiotic susceptibility and virulence factors of Lactic Acid Bacteria of aquatic origin intended for use as probiotics in aquaculture

(2013) Estefanía Muñoz-Atienza et al.   BMC MICROBIOLOGY

Effects of dietary arabinoxylan-oligosaccharides (AXOS) and endogenous probiotics on the growth performance, non-specific immunity and gut microbiota of juvenile Siberian sturgeon (Acipenser baerii)

(2013) Zahra Geraylou et al.   FISH & SHELLFISH IMMUNOLOGY

Changes in intestinal morphology and microbiota caused by dietary administration of inulin and Bacillus subtilis in gilthead sea bream (Sparus aurata L.) specimens

(2013) Rebeca Cerezuela et al.   FISH & SHELLFISH IMMUNOLOGY

Dietary synbiotic application modulates Atlantic salmon (Salmo salar) intestinal microbial communities and intestinal immunity

(2013) A. Abid et al.   FISH & SHELLFISH IMMUNOLOGY

The mucosal immune system of fish: The evolution of tolerating commensals while fighting pathogens

(2013) Daniela Gomez et al.   FISH & SHELLFISH IMMUNOLOGY

Exploring host-microbiota interactions in animal models and humans

(2013) A. D. Kostic et al.   GENES & DEVELOPMENT

Change in food ingestion induces rapid shifts in the diversity of microbiota associated with cutaneous mucus of Atlantic salmonSalmo salar

(2013) A. Landeira-Dabarca et al.   JOURNAL OF FISH BIOLOGY

Richness of human gut microbiome correlates with metabolic markers

(2013) Emmanuelle Le Chatelier et al.   NATURE

Candida utilis and Chlorella vulgaris Counteract Intestinal Inflammation in Atlantic Salmon (Salmo salar L.)

(2013) Fabian Grammes et al.   PLoS One

Dietary soybean protein concentrate-induced intestinal disorder in marine farmed Atlantic salmon, Salmo salar is associated with alterations in gut microbiota

(2013) Timothy J. Green et al.   VETERINARY MICROBIOLOGY

Enzyme-producing bacteria isolated from fish gut: a review

(2012) A.K. Ray et al.   AQUACULTURE NUTRITION

Early response of gene expression in the distal intestine of Atlantic salmon (Salmo salar L.) during the development of soybean meal induced enteritis

(2012) Christian Sahlmann et al.   FISH & SHELLFISH IMMUNOLOGY

Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences

(2012) David A W Soergel et al.   ISME Journal

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

A Crypt-Specific Core Microbiota Resides in the Mouse Colon

(2012) T. Pedron et al.   mBio

Bacteriocin Production: a Probiotic Trait?

(2011) Alleson Dobson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Culturable autochthonous gut bacteria in Atlantic salmon (Salmo salar L.) fed diets with or without chitin. Characterization by 16S rRNA gene sequencing, ability to produce enzymes and in vitro growth inhibition of four fish pathogens

(2011) Fatemeh Askarian et al.   AQUACULTURE

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA

(2011) Anders Lanzén et al.   FEMS MICROBIOLOGY ECOLOGY

Transcriptomic responses to functional feeds in Atlantic salmon (Salmo salar)

(2011) Luca Tacchi et al.   FISH & SHELLFISH IMMUNOLOGY

Characterization of the Gastrointestinal Microbiota in Health and Inflammatory Bowel Disease

(2011) Peter De Cruz et al.   INFLAMMATORY BOWEL DISEASES

Short-Term Fluctuations of Sugar Beet Damping-Off byPythium ultimumin Relation to Changes in Bacterial Communities After Organic Amendments to Two Soils

(2011) Miaomiao He et al.   PHYTOPATHOLOGY

Important antinutrients in plant feedstuffs for aquaculture: an update on recent findings regarding responses in salmonids

(2010) Åshild Krogdahl et al.   AQUACULTURE RESEARCH

Utilization of plant proteins in fish diets: effects of global demand and supplies of fishmeal

(2010) Ronald W Hardy   AQUACULTURE RESEARCH

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Adaptation of Vibrio vulnificus and an rpoS mutant to bile salts

(2010) Wei-Lun Chen et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Bacteria Grown on Natural Gas Prevent Soybean Meal-Induced Enteritis in Atlantic Salmon

(2010) Odd H. Romarheim et al.   JOURNAL OF NUTRITION

Segmented filamentous bacteria take the stage

(2010) I I Ivanov et al.   Mucosal Immunology

Host–microbiota interactions within the fish intestinal ecosystem

(2010) T Pérez et al.   Mucosal Immunology

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Gill observations in Atlantic salmon (Salmo salar, L.) during repeated amoebic gill disease (AGD) field exposure and survival challenge

(2009) Richard S. Taylor et al.   AQUACULTURE

Lactic acid bacteria vs. pathogens in the gastrointestinal tract of fish: a review

(2009) Einar Ringø et al.   AQUACULTURE RESEARCH

Microbial community profiling for human microbiome projects: Tools, techniques, and challenges

(2009) M. Hamady et al.   GENOME RESEARCH

Aliivibrio finisterrensis sp. nov., isolated from Manila clam, Ruditapes philippinarum and emended description of the genus Aliivibrio

(2009) R. Beaz-Hidalgo et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Characterization of probiotic properties of lactic acid bacteria isolated from intestinal microbiota of fish

(2008) José L. Balcázar et al.   AQUACULTURE

Global overview on the use of fish meal and fish oil in industrially compounded aquafeeds: Trends and future prospects

(2008) Albert G.J. Tacon et al.   AQUACULTURE

Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

(2008) Scot E Dowd et al.   BMC MICROBIOLOGY

Salinity and Temperature Effects on Physiological Responses of Vibrio fischeri from Diverse Ecological Niches

(2008) W. Soto et al.   MICROBIAL ECOLOGY