Characterization of the Gastrointestinal Microbiota in Health and Inflammatory Bowel Disease
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Title
Characterization of the Gastrointestinal Microbiota in Health and Inflammatory Bowel Disease
Authors
Keywords
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Journal
INFLAMMATORY BOWEL DISEASES
Volume 18, Issue 2, Pages 372-390
Publisher
Oxford University Press (OUP)
Online
2011-05-21
DOI
10.1002/ibd.21751
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Note: Only part of the references are listed.- Ulcerative colitis and irritable bowel patients exhibit distinct abnormalities of the gut microbiota
- (2011) Samah O Noor et al. BMC GASTROENTEROLOGY
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- (2011) Alan W Walker et al. BMC MICROBIOLOGY
- Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives
- (2011) M. Joossens et al. GUT
- Faecal microbiota in breast-fed infants after antibiotic therapy
- (2010) F Savino et al. ACTA PAEDIATRICA
- Effect of mother’s weight on infant’s microbiota acquisition, composition, and activity during early infancy: a prospective follow-up study initiated in early pregnancy
- (2010) Maria Carmen Collado et al. AMERICAN JOURNAL OF CLINICAL NUTRITION
- The effects of iron fortification on the gut microbiota in African children: a randomized controlled trial in Côte d'Ivoire
- (2010) Michael B Zimmermann et al. AMERICAN JOURNAL OF CLINICAL NUTRITION
- Mucolytic Bacteria With Increased Prevalence in IBD Mucosa Augment In Vitro Utilization of Mucin by Other Bacteria
- (2010) Chin Wen Png et al. AMERICAN JOURNAL OF GASTROENTEROLOGY
- Newly Developed Antibiotic Combination Therapy for Ulcerative Colitis: A Double-Blind Placebo-Controlled Multicenter Trial
- (2010) Toshifumi Ohkusa et al. AMERICAN JOURNAL OF GASTROENTEROLOGY
- The Bacteriology of Pouchitis
- (2010) Simon D. McLaughlin et al. ANNALS OF SURGERY
- The discovery and validation of colorectal cancer biomarkers
- (2010) Ching-Seng Ang et al. BIOMEDICAL CHROMATOGRAPHY
- The clinical Pseudomonas fluorescens MFN1032 strain exerts a cytotoxic effect on epithelial intestinal cells and induces Interleukin-8 via the AP-1 signaling pathway
- (2010) Amar Madi et al. BMC MICROBIOLOGY
- Homeostasis and Inflammation in the Intestine
- (2010) Wendy S. Garrett et al. CELL
- Virus-Plus-Susceptibility Gene Interaction Determines Crohn's Disease Gene Atg16L1 Phenotypes in Intestine
- (2010) Ken Cadwell et al. CELL
- A Pathobiont of the Microbiota Balances Host Colonization and Intestinal Inflammation
- (2010) Janet Chow et al. Cell Host & Microbe
- Endoplasmic reticulum stress: implications for inflammatory bowel disease pathogenesis
- (2010) Arthur Kaser et al. CURRENT OPINION IN GASTROENTEROLOGY
- The intestinal microbiota in inflammatory bowel diseases: time to connect with the host
- (2010) Harry Sokol et al. CURRENT OPINION IN GASTROENTEROLOGY
- High temporal and inter-individual variation detected in the human ileal microbiota
- (2010) Carien C. G. M. Booijink et al. ENVIRONMENTAL MICROBIOLOGY
- W1829 Changes in Composition of the Intestinal Microbiota Precede Onset of Colitis in Genetically-Susceptible (IL-10-/-) Mice
- (2010) Anne-Marie C. Overstreet et al. GASTROENTEROLOGY
- A Pyrosequencing Study in Twins Shows That Gastrointestinal Microbial Profiles Vary With Inflammatory Bowel Disease Phenotypes
- (2010) Ben P. Willing et al. GASTROENTEROLOGY
- Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes
- (2010) L. Tasse et al. GENOME RESEARCH
- Body fatness and bevacizumab-based therapy in metastatic colorectal cancer
- (2010) A. G. Renehan GUT
- Antibiotic use and inflammatory bowel diseases in childhood
- (2010) A. Hviid et al. GUT
- Depletion of luminal iron alters the gut microbiota and prevents Crohn's disease-like ileitis
- (2010) T. Werner et al. GUT
- Dysbiosis of fecal microbiota in Crohnʼs disease patients as revealed by a custom phylogenetic microarray
- (2010) Seungha Kang et al. INFLAMMATORY BOWEL DISEASES
- Disease phenotype and genotype are associated with shifts in intestinal-associated microbiota in inflammatory bowel diseases
- (2010) Daniel N. Frank et al. INFLAMMATORY BOWEL DISEASES
- Highlighting new phylogenetic specificities of Crohnʼs disease microbiota
- (2010) S. Mondot et al. INFLAMMATORY BOWEL DISEASES
- Unveiling an abundant core microbiota in the human adult colon by a phylogroup-independent searching approach
- (2010) Monika Sekelja et al. ISME Journal
- Opening up the "Black Box": Metabolic phenotyping and metabolome-wide association studies in epidemiology
- (2010) Magda Bictash et al. JOURNAL OF CLINICAL EPIDEMIOLOGY
- Durable Alteration of the Colonic Microbiota by the Administration of Donor Fecal Flora
- (2010) Martin J. Grehan et al. JOURNAL OF CLINICAL GASTROENTEROLOGY
- Novel Burkholderiales 23S rRNA Genes Identified in Ileal Biopsy Samples from Children: Preliminary Evidence that a Subtype Is Associated with Perianal Crohn's Disease
- (2010) W. H. Sim et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Transcriptional activity of the dominant gut mucosal microbiota in chronic inflammatory bowel disease patients
- (2010) A. Rehman et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Intestinal Microbiota of 6-week-old Infants Across Europe: Geographic Influence Beyond Delivery Mode, Breast-feeding, and Antibiotics
- (2010) Matteo Fallani et al. JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION
- Microbiota in Pediatric Inflammatory Bowel Disease
- (2010) Andreas Schwiertz et al. JOURNAL OF PEDIATRICS
- Potential of Magnetic Resonance Spectroscopy in Assessing the Effect of Fatty Acids on Inflammatory Bowel Disease in an Animal Model
- (2010) Sonal Varma et al. LIPIDS
- Similarity in the metabolic profile in macroscopically involved and un-involved colonic mucosa in patients with inflammatory bowel disease: an in vitro proton (1H) MR spectroscopy study
- (2010) Uma Sharma et al. MAGNETIC RESONANCE IMAGING
- Assessing Gut Microbial Diversity from Feces and Rectal Mucosa
- (2010) Ana Durbán et al. MICROBIAL ECOLOGY
- Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota
- (2010) Jan-Hendrik Hehemann et al. NATURE
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Recognition of peptidoglycan from the microbiota by Nod1 enhances systemic innate immunity
- (2010) Thomas B Clarke et al. NATURE MEDICINE
- Through Ageing, and Beyond: Gut Microbiota and Inflammatory Status in Seniors and Centenarians
- (2010) Elena Biagi et al. PLoS One
- Comparative Analysis of Fecal Microbiota in Infants with and without Eczema
- (2010) Pei-Ying Hong et al. PLoS One
- Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota
- (2010) J. L. Round et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
- (2010) P. J. Turnbaugh et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
- (2010) C. De Filippo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Succession of microbial consortia in the developing infant gut microbiome
- (2010) J. E. Koenig et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Microbe-Dependent Viral Key to Crohn's Box
- (2010) D. A. Peterson et al. Science Translational Medicine
- Lessons from the inflammasome: a molecular sentry linking Candida and Crohn's disease
- (2010) Linda M. Rehaume et al. TRENDS IN IMMUNOLOGY
- Association between entero-hepaticHelicobacterspecies and Crohn’s disease: a prospective cross-sectional study
- (2009) D. LAHARIE et al. ALIMENTARY PHARMACOLOGY & THERAPEUTICS
- Candida albicans Colonization and ASCA in Familial Crohn's Disease
- (2009) Annie Standaert-Vitse et al. AMERICAN JOURNAL OF GASTROENTEROLOGY
- Characterization of Inflammatory Bowel Disease With Urinary Metabolic Profiling
- (2009) Horace R T Williams et al. AMERICAN JOURNAL OF GASTROENTEROLOGY
- Crohn's disease-associated adherent-invasiveE.âcoliare selectively favoured by impaired autophagy to replicate intracellularly
- (2009) Pierre Lapaquette et al. CELLULAR MICROBIOLOGY
- Pathogenic agents in inflammatory bowel diseases
- (2009) Guillaume Pineton de Chambrun et al. CURRENT OPINION IN GASTROENTEROLOGY
- Nutrition and colonic health: the critical role of the microbiota
- (2009) Stephen JD OʼKeefe CURRENT OPINION IN GASTROENTEROLOGY
- Obesity and the human microbiome
- (2009) Ruth E Ley CURRENT OPINION IN GASTROENTEROLOGY
- The Microbiota in Inflammatory Bowel Disease in Different Age Groups
- (2009) Salvatore Cucchiara et al. DIGESTIVE DISEASES
- Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults
- (2009) Mirjana Rajilić-Stojanović et al. ENVIRONMENTAL MICROBIOLOGY
- Towards the human intestinal microbiota phylogenetic core
- (2009) Julien Tap et al. ENVIRONMENTAL MICROBIOLOGY
- Inhibition of HDAC9 Increases T Regulatory Cell Function and Prevents Colitis in Mice
- (2009) Edwin F. de Zoeten et al. GASTROENTEROLOGY
- Quality assurance measures in rectal cancer: caveat utilitor
- (2009) R Kennelly et al. GUT
- Changes in gut microbiota control inflammation in obese mice through a mechanism involving GLP-2-driven improvement of gut permeability
- (2009) P. D. Cani et al. GUT
- Mycobacterium avium subspecies paratuberculosis in children with early-onset Crohnʼs disease
- (2009) Carl D. Kirkwood et al. INFLAMMATORY BOWEL DISEASES
- Low counts of Faecalibacterium prausnitzii in colitis microbiota
- (2009) H. Sokol et al. INFLAMMATORY BOWEL DISEASES
- Products of the Colonic Microbiota Mediate the Effects of Diet on Colon Cancer Risk
- (2009) Stephen J. D. O'Keefe et al. JOURNAL OF NUTRITION
- Metabonomics in Ulcerative Colitis: Diagnostics, Biomarker Identification, And Insight into the Pathophysiology
- (2009) Jacob T. Bjerrum et al. JOURNAL OF PROTEOME RESEARCH
- NMR-based metabonomics analysis of mouse urine and fecal extracts following oral treatment with the broad-spectrum antibiotic enrofloxacin (Baytril)
- (2009) Lindsey E. Romick-Rosendale et al. MAGNETIC RESONANCE IN CHEMISTRY
- The development of intestinal lymphoid tissues at the interface of self and microbiota
- (2009) G Eberl et al. Mucosal Immunology
- Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43
- (2009) Kendle M. Maslowski et al. NATURE
- Inflammatory Bowel Disease and Mutations Affecting the Interleukin-10 Receptor
- (2009) Erik-Oliver Glocker et al. NEW ENGLAND JOURNAL OF MEDICINE
- Modulation of the Intestinal Microbiota Alters Colitis-Associated Colorectal Cancer Susceptibility
- (2009) Joshua M. Uronis et al. PLoS One
- Metabolomics Reveals Metabolic Biomarkers of Crohn's Disease
- (2009) Janet Jansson et al. PLoS One
- Butyrate-Induced Transcriptional Changes in Human Colonic Mucosa
- (2009) Steven A. L. W. Vanhoutvin et al. PLoS One
- Nod2 is required for the regulation of commensal microbiota in the intestine
- (2009) T. Petnicki-Ocwieja et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice
- (2009) P. J. Turnbaugh et al. Science Translational Medicine
- Endoplasmic reticulum stress in the intestinal epithelium and inflammatory bowel disease
- (2009) Arthur Kaser et al. SEMINARS IN IMMUNOLOGY
- An Update on the Epidemiology of Inflammatory Bowel Disease in Asia
- (2008) Kelvin T. Thia et al. AMERICAN JOURNAL OF GASTROENTEROLOGY
- Unstable Composition of the Fecal Microbiota in Ulcerative Colitis During Clinical Remission
- (2008) Cristina Martinez et al. AMERICAN JOURNAL OF GASTROENTEROLOGY
- Isolation of Bifidobacteria from Breast Milk and Assessment of the Bifidobacterial Population by PCR-Denaturing Gradient Gel Electrophoresis and Quantitative Real-Time PCR
- (2008) R. Martin et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- An overview of proteomic and metabolomic technologies and their application to pregnancy research
- (2008) RP Horgan et al. BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY
- XBP1 Links ER Stress to Intestinal Inflammation and Confers Genetic Risk for Human Inflammatory Bowel Disease
- (2008) Arthur Kaser et al. CELL
- Metagenomic Approaches for Defining the Pathogenesis of Inflammatory Bowel Diseases
- (2008) Daniel A. Peterson et al. Cell Host & Microbe
- Specific Microbiota Direct the Differentiation of IL-17-Producing T-Helper Cells in the Mucosa of the Small Intestine
- (2008) Ivaylo I. Ivanov et al. Cell Host & Microbe
- Paneth cells and inflammation dance together in Crohn's disease
- (2008) Arthur Kaser et al. CELL RESEARCH
- Reduced -defensin expression is associated with inflammation and not NOD2 mutation status in ileal Crohn's disease
- (2008) L A Simms et al. GUT
- Disorders of a modern lifestyle: reconciling the epidemiology of inflammatory bowel diseases
- (2008) C. N Bernstein et al. GUT
- Detection of Enterohepatic and GastricHelicobacterSpecies in Fecal Specimens of Children with Crohn's Disease
- (2008) Si Ming Man et al. HELICOBACTER
- Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohnʼs disease
- (2008) Ben Willing et al. INFLAMMATORY BOWEL DISEASES
- Molecular analysis of the gut microbiota of identical twins with Crohn's disease
- (2008) Johan Dicksved et al. ISME Journal
- Shotgun metaproteomics of the human distal gut microbiota
- (2008) Nathan C Verberkmoes et al. ISME Journal
- Dynamics of the Mucosa-Associated Flora in Ulcerative Colitis Patients during Remission and Clinical Relapse
- (2008) S. J. Ott et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Intestinal TM7 bacterial phylogenies in active inflammatory bowel disease
- (2008) T. Kuehbacher et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Metabolism of the colonic mucosa in patients with inflammatory bowel diseases: an in vitro proton magnetic resonance spectroscopy study
- (2008) Krithika Balasubramanian et al. MAGNETIC RESONANCE IMAGING
- A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells
- (2008) Ken Cadwell et al. NATURE
- Human metabolic phenotype diversity and its association with diet and blood pressure
- (2008) Elaine Holmes et al. NATURE
- A microbial symbiosis factor prevents intestinal inflammatory disease
- (2008) Sarkis K. Mazmanian et al. NATURE
- Lymphoid tissue genesis induced by commensals through NOD1 regulates intestinal homeostasis
- (2008) Djahida Bouskra et al. NATURE
- A core gut microbiome in obese and lean twins
- (2008) Peter J. Turnbaugh et al. NATURE
- Worlds within worlds: evolution of the vertebrate gut microbiota
- (2008) Ruth E. Ley et al. NATURE REVIEWS MICROBIOLOGY
- Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing
- (2008) Anders F. Andersson et al. PLoS One
- Identification and Characterisation of Pseudomonas 16S Ribosomal DNA from Ileal Biopsies of Children with Crohn's Disease
- (2008) Josef Wagner et al. PLoS One
- Paneth cells directly sense gut commensals and maintain homeostasis at the intestinal host-microbial interface
- (2008) S. Vaishnava et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
- (2008) H. Sokol et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Symbiotic gut microbes modulate human metabolic phenotypes
- (2008) M. Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fungi and inflammatory bowel diseases: Alterations of composition and diversity
- (2008) Stephan J. Ott et al. SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY
- The search for disease-associated compositional shifts in bowel bacterial communities of humans
- (2008) Gerald W. Tannock TRENDS IN MICROBIOLOGY
- Gut Microbiota of Children Living in Rural South Thailand and Urban Singapore
- (2008) Ka Weng Mah et al. ALLERGOLOGY INTERNATIONAL
- Detection of Mycobacterium avium subspecies paratuberculosis from patients with Crohnʼs disease using nucleic acid-based techniques: A systematic review and meta-analysis
- (2007) I. Abubakar et al. INFLAMMATORY BOWEL DISEASES
- Active Crohnʼs disease and ulcerative colitis can be specifically diagnosed and monitored based on the biostructure of the fecal flora
- (2007) Alexander Swidsinski et al. INFLAMMATORY BOWEL DISEASES
- Bifidobacterium pseudocatenulatum is associated with atopic eczema: A nested case-control study investigating the fecal microbiota of infants
- (2007) Claudia Gore et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- Reduced diversity in the early fecal microbiota of infants with atopic eczema
- (2007) Mei Wang et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- Differential clustering of bowel biopsy-associated bacterial profiles of specimens collected in Mexico and Canada: what do these profiles represent?
- (2007) R. Bibiloni et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Gender-related and age-related urinalysis of healthy subjects by NMR-based metabonomics
- (2007) Nikolaos G. Psihogios et al. NMR IN BIOMEDICINE
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