The genomic response to urbanization in the damselfly Ischnura elegans

Genome-wide parallelism underlies contemporary adaptation in urban lizards

(2023) Kristin M. Winchell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The effect of temperature and invasive alien predator on genetic and phenotypic variation in the damselfly Ischnura elegans: cross-latitude comparison

(2023) Guillaume Wos et al.   Frontiers in Zoology

A fast pace-of-life is traded off against a high thermal performance

(2022) Nedim Tüzün et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Global urban environmental change drives adaptation in white clover

(2022) James S. Santangelo et al.   SCIENCE

The “New Synthesis”

(2022) Nicholas H. Barton   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Editorial: Cognition and Adaptation to Urban Environments

(2022) Simon Ducatez et al.   Frontiers in Ecology and Evolution

Warming and predation risk only weakly shape size-mediated priority effects in a cannibalistic damselfly

(2022) Mateusz Raczyński et al.   Scientific Reports

LEA 3: Factor models in population genetics and ecological genomics with R

(2021) Clément Gain et al.   Molecular Ecology Resources

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

Latitudinal clines in sexual selection, sexual size dimorphism and sex‐specific genetic dispersal during a poleward range expansion

(2021) Rachael Y. Dudaniec et al.   JOURNAL OF ANIMAL ECOLOGY

Genomic basis of parallel adaptation varies with divergence in Arabidopsis and its relatives

(2021) Magdalena Bohutínská et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution in Cities

(2021) Sarah E. Diamond et al.   Annual Review of Ecology Evolution and Systematics

Consistent signatures of urban adaptation in a native, urban invader ant Tapinoma sessile

(2021) Alexander J. Blumenfeld et al.   MOLECULAR ECOLOGY

Continent-wide genomic signatures of adaptation to urbanisation in a songbird across Europe

(2021) Pablo Salmón et al.   Nature Communications

Epigenetics and the city: Non‐parallel DNA methylation modifications across pairs of urban‐forest Great tit populations

(2021) Aude E. Caizergues et al.   Evolutionary Applications

Cryptic eco‐evolutionary feedback in the city: Urban evolution of prey dampens the effect of urban evolution of the predator

(2021) Kristien I. Brans et al.   JOURNAL OF ANIMAL ECOLOGY

Urbanization extends flight phenology and leads to local adaptation of seasonal plasticity in Lepidoptera

(2021) Thomas Merckx et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Urbanization without isolation: the absence of genetic structure among cities and forests in the tiny acorn ant Temnothorax nylanderi

(2020) A. Khimoun et al.   Biology Letters

Performing highly efficient genome scans for local adaptation with R package pcadapt version 4

(2020) Florian Privé et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genes acting in synapses and neuron projections are early targets of selection during urban colonization

(2020) Jakob C. Mueller et al.   MOLECULAR ECOLOGY

Polygenic adaptation: a unifying framework to understand positive selection

(2020) Neda Barghi et al.   NATURE REVIEWS GENETICS

Estimating the genome-wide contribution of selection to temporal allele frequency change

(2020) Vince Buffalo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the causes of geographically heterogeneous parallel evolution in sticklebacks

(2020) Bohao Fang et al.   Nature Ecology & Evolution

Effects of predator cues carry over from egg and larval stage to adult life-history traits in a damselfly

(2020) Szymon Sniegula et al.   Freshwater Science

Genetic Adaptation in New York City Rats

(2020) Arbel Harpak et al.   Genome Biology and Evolution

Adaptive Evolution in Cities: Progress and Misconceptions

(2020) Max R. Lambert et al.   TRENDS IN ECOLOGY & EVOLUTION

LFMM 2: Fast and accurate inference of gene-environment associations in genome-wide studies

(2019) Kevin Caye et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic redundancy fuels polygenic adaptation in Drosophila

(2019) Neda Barghi et al.   PLOS BIOLOGY

Population genomics perspectives on convergent adaptation

(2019) Kristin M. Lee et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Thinking About the Evolution of Complex Traits in the Era of Genome-Wide Association Studies

(2019) Guy Sella et al.   Annual Review of Genomics and Human Genetics

Gene flow and genetic drift in urban environments

(2019) Lindsay S. Miles et al.   MOLECULAR ECOLOGY

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

Adapterama III: Quadruple-indexed, double/triple-enzyme RADseq libraries (2RAD/3RAD)

(2019) Natalia J. Bayona-Vásquez et al.   PeerJ

Using natural laboratories to study evolution to global warming: contrasting altitudinal, latitudinal, and urbanization gradients

(2019) Julie Verheyen et al.   Current Opinion in Insect Science

Urban Evolutionary Ecology and the Potential Benefits of Implementing Genomics

(2018) Christopher J Schell   JOURNAL OF HEREDITY

Signatures of local adaptation along environmental gradients in a range-expanding damselfly (Ischnura elegans )

(2018) Rachael Y. Dudaniec et al.   MOLECULAR ECOLOGY

Genome-wide single nucleotide polymorphism scan suggests adaptation to urbanization in an important pollinator, the red-tailed bumblebee ( Bombus lapidarius L.)

(2018) Panagiotis Theodorou et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Many-to-one form-to-function mapping weakens parallel morphological evolution

(2017) Cole J. Thompson et al.   EVOLUTION

Sexual selection reinforces a higher flight endurance in urban damselflies

(2017) Nedim Tüzün et al.   Evolutionary Applications

Microgeographic differentiation in thermal performance curves between rural and urban populations of an aquatic insect

(2017) Nedim Tüzün et al.   Evolutionary Applications

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

(2017) Stephen E. Fick et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Context-dependent local movements of the blue-tailed damselfly, Ischnura elegans: effects of pond characteristics and the landscape matrix

(2017) Mickaël Le Gall et al.   JOURNAL OF INSECT CONSERVATION

Signatures of positive selection and local adaptation to urbanization in white-footed mice (Peromyscus leucopus )

(2017) Stephen E. Harris et al.   MOLECULAR ECOLOGY

RADseq provides unprecedented insights into molecular ecology and evolutionary genetics: comment on Breaking RAD by Lowry et al . (2016)

(2017) Garrett J. McKinney et al.   Molecular Ecology Resources

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations

(2017) Julian M. Catchen et al.   Molecular Ecology Resources

Responsible RAD: Striving for best practices in population genomic studies of adaptation

(2017) David B. Lowry et al.   Molecular Ecology Resources

Global urban signatures of phenotypic change in animal and plant populations

(2017) Marina Alberti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of life in urban environments

(2017) Marc T. J. Johnson et al.   SCIENCE

Dragonflies and damselflies (Odonata) in urban ecosystems: A review

(2016) Giovanna VILLALOBOS-JIMENEZ et al.   EUROPEAN JOURNAL OF ENTOMOLOGY

Gene expression under thermal stress varies across a geographical range expansion front

(2016) Lesley T. Lancaster et al.   MOLECULAR ECOLOGY

Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation

(2016) David B. Lowry et al.   Molecular Ecology Resources

The industrial melanism mutation in British peppered moths is a transposable element

(2016) Arjen E. van’t Hof et al.   NATURE

The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish

(2016) N. M. Reid et al.   SCIENCE

Dragonflies and damselflies (Odonata) in urban ecosystems: A review

(2016) Giovanna VILLALOBOS-JIMENEZ et al.   EUROPEAN JOURNAL OF ENTOMOLOGY

The Role of Standing Variation in Geographic Convergent Adaptation

(2015) Peter L. Ralph et al.   AMERICAN NATURALIST

Combined epigenetic and intraspecific variation of theDRD4andSERTgenes influence novelty seeking behavior in great titParus major

(2015) Sepand Riyahi et al.   Epigenetics

Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

(2015) M. Gautier   GENETICS

Latitudinal shift in thermal niche breadth results from thermal release during a climate-mediated range expansion

(2015) Lesley T. Lancaster et al.   JOURNAL OF BIOGEOGRAPHY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

The Molecular Basis of Phenotypic Convergence

(2014) Erica Bree Rosenblum et al.   Annual Review of Ecology Evolution and Systematics

Local adaptation and the potential effects of a contaminant on predator avoidance and antipredator responses under global warming: a space-for-time substitution approach

(2014) Lizanne Janssens et al.   Evolutionary Applications

Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing

(2014) Nathan R. Campbell et al.   Molecular Ecology Resources

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Candidate gene polymorphisms for behavioural adaptations during urbanization in blackbirds

(2013) J. C. Mueller et al.   MOLECULAR ECOLOGY

The genetic causes of convergent evolution

(2013) David L. Stern   NATURE REVIEWS GENETICS

Global forecasts of urban expansion to 2030 and direct impacts on biodiversity and carbon pools

(2012) K. C. Seto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The probability of genetic parallelism and convergence in natural populations

(2012) G. L. Conte et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Gene set analysis of SNP data: benefits, challenges, and future directions

(2011) Brooke L Fridley et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

CONVERGENCE, ADAPTATION, AND CONSTRAINT

(2011) Jonathan B. Losos   EVOLUTION

Latitudinal and voltinism compensation shape thermal reaction norms for growth rate

(2011) LISA N. S. SHAMA et al.   MOLECULAR ECOLOGY

Rapid Growth Reduces Cold Resistance: Evidence from Latitudinal Variation in Growth Rate, Cold Resistance and Stress Proteins

(2011) Robby Stoks et al.   PLoS One

A conceptual framework for the colonisation of urban areas: the blackbird Turdus merula as a case study

(2010) Karl L. Evans et al.   BIOLOGICAL REVIEWS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

SPATIAL AND TEMPORAL DYNAMICS IN A SEXUAL SELECTION MOSAIC

(2008) Thomas P. Gosden et al.   EVOLUTION