The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish

Genetic basis for rapidly evolved tolerance in the wild: adaptation to toxic pollutants by an estuarine fish species

(2016) Diane Nacci et al.   MOLECULAR ECOLOGY

A Coalescent Model for a Sweep of a Unique Standing Variant

(2015) Jeremy J. Berg et al.   GENETICS

A Coalescent Model for a Sweep of a Unique Standing Variant

(2015) Jeremy J. Berg et al.   GENETICS

SAMBLASTER: fast duplicate marking and structural variant read extraction

(2014) G. G. Faust et al.   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Targeted approach to identify genetic loci associated with evolved dioxin tolerance in Atlantic Killifish (Fundulus heteroclitus)

(2014) Dina A Proestou et al.   BMC EVOLUTIONARY BIOLOGY

Genetic variation at aryl hydrocarbon receptor (AHR) loci in populations of Atlantic killifish (Fundulus heteroclitus) inhabiting polluted and reference habitats

(2014) Adam M Reitzel et al.   BMC EVOLUTIONARY BIOLOGY

A RAD-Tag Genetic Map for the Platyfish ( Xiphophorus maculatus ) Reveals Mechanisms of Karyotype Evolution Among Teleost Fish

(2014) Angel Amores et al.   GENETICS

Crude Oil Impairs Cardiac Excitation-Contraction Coupling in Fish

(2014) F. Brette et al.   SCIENCE

Rphylip: an R interface for PHYLIP

(2014) Liam J. Revell et al.   Methods in Ecology and Evolution

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

The Aryl Hydrocarbon Receptor Complex and the Control of Gene Expression

(2012) Timothy V. Beischlag et al.   CRITICAL REVIEWS IN EUKARYOTIC GENE EXPRESSION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Evolutionary rescue and the limits of adaptation

(2012) G. Bell   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Detecting Differential Expression in RNA-sequence Data Using Quasi-likelihood with Shrunken Dispersion Estimates

(2012) Steven P. Lund et al.   Statistical Applications in Genetics and Molecular Biology

Revisiting an Old Riddle: What Determines Genetic Diversity Levels within Species?

(2012) Ellen M. Leffler et al.   PLOS BIOLOGY

Common mechanism underlies repeated evolution of extreme pollution tolerance

(2011) A. Whitehead et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Mechanistic Basis of Resistance to PCBs in Atlantic Tomcod from the Hudson River

(2011) I. Wirgin et al.   SCIENCE

Exactly the Same but Different: Promiscuity and Diversity in the Molecular Mechanisms of Action of the Aryl Hydrocarbon (Dioxin) Receptor

(2011) Michael S. Denison et al.   TOXICOLOGICAL SCIENCES

Estrogen responses in killifish (Fundulus heteroclitus) from polluted and unpolluted environments are site- and gene-specific

(2010) Sarah R. Greytak et al.   AQUATIC TOXICOLOGY

AHR2 mediates cardiac teratogenesis of polycyclic aromatic hydrocarbons and PCB-126 in Atlantic killifish (Fundulus heteroclitus)

(2010) Bryan W. Clark et al.   AQUATIC TOXICOLOGY

Adaptation of the Estuarine Fish Fundulus heteroclitus (Atlantic Killifish) to Polychlorinated Biphenyls (PCBs)

(2010) Diane E. Nacci et al.   Estuaries and Coasts

The Aryl Hydrocarbon Receptor-interacting Protein (AIP) Is Required for Dioxin-induced Hepatotoxicity but Not for the Induction of theCyp1a1andCyp1a2Genes

(2010) Manabu Nukaya et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

(2010) X. Yi et al.   SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Relative influences of historical and contemporary forces shaping the distribution of genetic variation in the Atlantic killifish, Fundulus heteroclitus

(2008) DAVID D. DUVERNELL et al.   MOLECULAR ECOLOGY

Human influences on rates of phenotypic change in wild animal populations

(2007) ANDREW P. HENDRY et al.   MOLECULAR ECOLOGY