Epigenetics and the city: Non‐parallel DNA methylation modifications across pairs of urban‐forest Great tit populations

An avian urban morphotype: how the city environment shapes great tit morphology at different life stages

(2021) Aude E. Caizergues et al.   URBAN ECOSYSTEMS

Continent-wide genomic signatures of adaptation to urbanisation in a songbird across Europe

(2021) Pablo Salmón et al.   Nature Communications

Phenotypic variation in urban environments: mechanisms and implications

(2021) M.J. Thompson et al.   TRENDS IN ECOLOGY & EVOLUTION

Genes acting in synapses and neuron projections are early targets of selection during urban colonization

(2020) Jakob C. Mueller et al.   MOLECULAR ECOLOGY

Growing in the city: urban evolutionary ecology of avian growth rates

(2020) Michela Corsini et al.   Evolutionary Applications

On the Use of Blood Samples for Measuring DNA Methylation in Ecological Epigenetic Studies

(2020) Arild Husby   INTEGRATIVE AND COMPARATIVE BIOLOGY

Seasonal variation in genome-wide DNA methylation patterns and the onset of seasonal timing of reproduction in great tits

(2019) Heidi M Viitaniemi et al.   Genome Biology and Evolution

Avian ecological epigenetics: pitfalls and promises

(2019) Bernice Sepers et al.   JOURNAL OF ORNITHOLOGY

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

OUP accepted manuscript

(2018)   BIOINFORMATICS

Genome-wide high-resolution mapping of DNA methylation identifies epigenetic variation across different salt stress in Maize (Zea mays L.)

(2018) Lifang Sun et al.   EUPHYTICA

Evolution of genomic variation in the burrowing owl in response to recent colonization of urban areas

(2018) Jakob C. Mueller et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Urban versus forest ecotypes are not explained by divergent reproductive selection

(2018) Aude E. Caizergues et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genome-wide single nucleotide polymorphism scan suggests adaptation to urbanization in an important pollinator, the red-tailed bumblebee ( Bombus lapidarius L.)

(2018) Panagiotis Theodorou et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Methylome of Vertebrate Sex Chromosomes

(2018) Shafagh Waters et al.   Genes

Illuminated night alters hippocampal gene expressions and induces depressive-like responses in diurnal corvids

(2018) S. K. Tahajjul Taufique et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

The evolution of city life

(2018) James S. Santangelo et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A roadmap for urban evolutionary ecology

(2018) L. Ruth Rivkin et al.   Evolutionary Applications

Speciation and the City

(2018) Ken A. Thompson et al.   TRENDS IN ECOLOGY & EVOLUTION

Many-to-one form-to-function mapping weakens parallel morphological evolution

(2017) Cole J. Thompson et al.   EVOLUTION

Great tits and the city: Distribution of genomic diversity and gene-environment associations along an urbanization gradient

(2017) Charles Perrier et al.   Evolutionary Applications

A review of urban impacts on avian life-history evolution: Does city living lead to slower pace of life?

(2017) Tuul Sepp et al.   GLOBAL CHANGE BIOLOGY

Global urban signatures of phenotypic change in animal and plant populations

(2017) Marina Alberti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene and transposable element methylation in great tit (Parus major) brain and blood

(2016) Martijn F. L. Derks et al.   BMC GENOMICS

Personality and urbanization: behavioural traits and DRD4 SNP830 polymorphisms in great tits in Barcelona city

(2016) Sepand Riyahi et al.   JOURNAL OF ETHOLOGY

Genetic and epigenetic differences associated with environmental gradients in replicate populations of two salt marsh perennials

(2016) C. M. Foust et al.   MOLECULAR ECOLOGY

The concerted impact of domestication and transposon insertions on methylation patterns between dogs and grey wolves

(2016) Ilana Janowitz Koch et al.   MOLECULAR ECOLOGY

Air pollution and urban structure linkages: Evidence from European cities

(2016) Miguel Cárdenas Rodríguez et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish

(2016) N. M. Reid et al.   SCIENCE

Evolutionary signals of selection on cognition from the great tit genome and methylome

(2016) Veronika N. Laine et al.   Nature Communications

Variation at the DRD4 locus is associated with wariness and local site selection in urban black swans

(2015) Wouter F.D. van Dongen et al.   BMC EVOLUTIONARY BIOLOGY

Combined epigenetic and intraspecific variation of theDRD4andSERTgenes influence novelty seeking behavior in great titParus major

(2015) Sepand Riyahi et al.   Epigenetics

Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes

(2015) Brenna R. Forester et al.   MOLECULAR ECOLOGY

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

(2015) Manu J Dubin et al.   eLife

Adaptive evolution in urban ecosystems

(2014) Colin M. Donihue et al.   AMBIO

Patterns of DNA Methylation in Animals: An Ecotoxicological Perspective

(2014) J. A. Head   INTEGRATIVE AND COMPARATIVE BIOLOGY

Epigenetics, plasticity, and evolution: How do we link epigenetic change to phenotype?

(2014) Elizabeth J. Duncan et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Explaining additional genetic variation in complex traits

(2014) Matthew R. Robinson et al.   TRENDS IN GENETICS

Behavioural adjustments for a life in the city

(2013) Daniel Sol et al.   ANIMAL BEHAVIOUR

Urban behavioural adaptation

(2013) Colin J. Garroway et al.   MOLECULAR ECOLOGY

Candidate gene polymorphisms for behavioural adaptations during urbanization in blackbirds

(2013) J. C. Mueller et al.   MOLECULAR ECOLOGY

StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations

(2013) Luke W. Pembleton et al.   Molecular Ecology Resources

The impact of climate change on plant epigenomes

(2013) Qiong A. Liu   TRENDS IN GENETICS

Behavioural responses of wildlife to urban environments

(2012) Hélène Lowry et al.   BIOLOGICAL REVIEWS

Differential roles for Nr4a1 and Nr4a2 in object location vs. object recognition long-term memory

(2012) S. E. McNulty et al.   LEARNING & MEMORY

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

Linking behavioural syndromes and cognition: a behavioural ecology perspective

(2012) A. Sih et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

CONVERGENCE, ADAPTATION, AND CONSTRAINT

(2011) Jonathan B. Losos   EVOLUTION

Beyond DNA: integrating inclusive inheritance into an extended theory of evolution

(2011) Étienne Danchin et al.   NATURE REVIEWS GENETICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

What Role Does Heritable Epigenetic Variation Play in Phenotypic Evolution?

(2010) Christina L. Richards et al.   BIOSCIENCE

Differentially expressed genes for aggressive pecking behaviour in laying hens

(2009) Bart Buitenhuis et al.   BMC GENOMICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Avian productivity in urban landscapes: a review and meta-analysis

(2008) D. E. CHAMBERLAIN et al.   IBIS

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Global Change and the Ecology of Cities

(2008) N. B. Grimm et al.   SCIENCE