Short-term perennial peanut integration into bahiagrass system influence on soil microbial-mediated nitrogen cycling activities and microbial co-occurrence networks

Soil enzyme activity and stoichiometry in secondary grasslands along a climatic gradient of subtropical China

(2022) Adugna Feyissa et al.   SCIENCE OF THE TOTAL ENVIRONMENT

From diversity to complexity: Microbial networks in soils

(2022) Ksenia Guseva et al.   SOIL BIOLOGY & BIOCHEMISTRY

Stable nitrogen-cycling capacity in relation to fertilization and intercropping in a sub-boreal grassland

(2022) Honghong Li et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Legume-based intercropping systems promote beneficial rhizobacterial community and crop yield under stressing conditions

(2022) Imane Chamkhi et al.   INDUSTRIAL CROPS AND PRODUCTS

Legume Species Alter the Effect of Biochar Application on Microbial Diversity and Functions in the Mixed Cropping System—Based on a Pot Experiment

(2022) Akari Kimura et al.   Agriculture-Basel

Soil sample storage conditions impact extracellular enzyme activity and bacterial amplicon diversity metrics in a semi-arid ecosystem

(2022) Jenna M. Lane et al.   SOIL BIOLOGY & BIOCHEMISTRY

Environmental stress destabilizes microbial networks

(2021) Damian J. Hernandez et al.   ISME Journal

Litter mass, deposition rate, and decomposition in N‐fertilized or grass‐legume grazing systems

(2021) David M. Jaramillo et al.   CROP SCIENCE

Nutrient excretion from cattle grazing n‐fertilized grass or grass‐legume pastures

(2021) Liza Garcia et al.   AGRONOMY JOURNAL

Litter mass and nitrogen disappearance in year‐round nitrogen‐fertilized grass and legume‐grass forage systems

(2021) Liliane Severino da Silva et al.   AGRONOMY JOURNAL

Differential response of the nitrifying microbes and net nitrification rates (NNRs) between different cereal and legume crop soils with chemical fertilization

(2021) Moumita Sintia et al.   Arabian Journal of Geosciences

Unraveling negative biotic interactions determining soil microbial community assembly and functioning

(2021) Sana Romdhane et al.   ISME Journal

Metagenomic insights into nitrogen and phosphorus cycling at the soil aggregate scale driven by organic material amendments

(2021) Xingjie Wu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

A Two-Step PCR Protocol Enabling Flexible Primer Choice and High Sequencing Yield for Illumina MiSeq Meta-Barcoding

(2021) Ko-Hsuan Chen et al.   Agronomy-Basel

Soybean crop incorporation in irrigated rice cultivation improves nitrogen availability, soil microbial diversity and activity, and growth of ryegrass

(2021) Filipe Selau Carlos et al.   APPLIED SOIL ECOLOGY

Soil bacterial community response to rhizoma peanut incorporation into Florida pastures

(2021) Victor A. Guerra et al.   JOURNAL OF ENVIRONMENTAL QUALITY

Fusarium mirum sp. nov, intertwining Fusarium madaense and Fusarium andiyazi, pathogens of tropical grasses

(2021) Marileide M. Costa et al.   Fungal Biology

Biology and applications of Clonostachys rosea

(2020) Zhan‐Bin Sun et al.   JOURNAL OF APPLIED MICROBIOLOGY

Soil bacteria and fungi respond differently to plant diversity and plant family composition during the secondary succession of abandoned farmland on the Loess Plateau, China

(2020) Zekun Zhong et al.   PLANT AND SOIL

Herbage responses and nitrogen agronomic efficiency of bahiagrass‐legume mixtures

(2020) Erick R. S. Santos et al.   AGRONOMY JOURNAL

Forage legumes in grass pastures in tropical Brazil and likely impacts on greenhouse gas emissions: A review

(2020) Robert M. Boddey et al.   GRASS AND FORAGE SCIENCE

Plant–microbiome interactions: from community assembly to plant health

(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Responses of plant, soil bacterial and fungal communities to grazing vary with pasture seasons and grassland types, northern Tibet

(2020) Haorui Zhang et al.   LAND DEGRADATION & DEVELOPMENT

Mortierella Species as the Plant Growth-Promoting Fungi Present in the Agricultural Soils

(2020) Ewa Ozimek et al.   Agriculture-Basel

Different responses of soil bacterial and fungal communities to nitrogen deposition in a subtropical forest

(2020) Jianqing Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Urea fertilization decreases soil bacterial diversity, but improves microbial biomass, respiration, and N-cycling potential in a semiarid grassland

(2019) Chao Zhang et al.   BIOLOGY AND FERTILITY OF SOILS

Soil bacterial and fungal communities of six bahiagrass cultivars

(2019) Lukas Beule et al.   PeerJ

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Lacipirellula parvula gen. nov., sp. nov., representing a lineage of planctomycetes widespread in low-oxygen habitats, description of the family Lacipirellulaceae fam. nov. and proposal of the orders Pirellulales ord. nov., Gemmatales ord. nov. and Isosphaerales ord. nov.

(2019) Svetlana N. Dedysh et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

The role of microbial community in the decomposition of leaf litter and deadwood

(2018) Alessia Bani et al.   APPLIED SOIL ECOLOGY

Modular Traits of the Rhizobiales Root Microbiota and Their Evolutionary Relationship with Symbiotic Rhizobia

(2018) Ruben Garrido-Oter et al.   Cell Host & Microbe

Annual and Perennial Peanut Mixed with ‘Pensacola’ Bahiagrass in North Florida

(2018) David M. Jaramillo et al.   CROP SCIENCE

Herbage Responses and Biological N Fixation of Bahiagrass and Rhizoma Peanut Monocultures Compared with their Binary Mixtures

(2018) Erick R. S. Santos et al.   CROP SCIENCE

Autotrophic and symbiotic diazotrophs dominate nitrogen-fixing communities in Tibetan grassland soils

(2018) Rongxiao Che et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

(2018) Daniel R. Lammel et al.   Microbiome

Grass-Legume Mixtures for Improved Soil Health in Cultivated Agroecosystem

(2018) Dhruba Dhakal et al.   Sustainability

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

(2018) Paloma Durán et al.   CELL

Rhizospheric and endospheric diazotrophs mediated soil fertility intensification in sugarcane-legume intercropping systems

(2018) Manoj Kumar Solanki et al.   JOURNAL OF SOILS AND SEDIMENTS

Enrichment of Verrucomicrobia, Actinobacteria and Burkholderiales drives selection of bacterial community from soil by maize roots in a traditional milpa agroecosystem

(2018) Eneas Aguirre-von-Wobeser et al.   PLoS One

Redefining Humicola sensu stricto and related genera in the Chaetomiaceae

(2018) X.W. Wang et al.   STUDIES IN MYCOLOGY

Comparison of sequencing the D2 region of the large subunit ribosomal RNA gene (MicroSEQ®) versus the internal transcribed spacer (ITS) regions using two public databases for identification of common and uncommon clinically relevant fungal species

(2017) S. Arbefeville et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Spatial and temporal dynamics of nitrogen fixing, nitrifying and denitrifying microbes in an unfertilized grassland soil

(2017) Kathleen Regan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metagenomic reconstruction of nitrogen cycling pathways in a CO 2 -enriched grassland ecosystem

(2017) Qichao Tu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Variation in Soil Microbial Community Structure Associated with Different Legume Species Is Greater than that Associated with Different Grass Species

(2017) Yang Zhou et al.   Frontiers in Microbiology

Plant growth-promoting actinobacteria: a new strategy for enhancing sustainable production and protection of grain legumes

(2017) Arumugam Sathya et al.   3 Biotech

Plant growth-promoting actinobacteria: a new strategy for enhancing sustainable production and protection of grain legumes

(2017) Arumugam Sathya et al.   3 Biotech

Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis

(2016) Bo Yang et al.   BMC BIOINFORMATICS

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Seasonal patterns of nitrogen cycling in subtropical short-hydroperiod wetlands: Effects of precipitation and restoration

(2016) Xiaolin Liao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The dynamics of soil micro-food web structure and functions vary according to litter quality

(2016) Marie Sauvadet et al.   SOIL BIOLOGY & BIOCHEMISTRY

Molecular diversity and multifarious plant growth promoting attributes of Bacilli associated with wheat (Triticum aestivumL.) rhizosphere from six diverse agro-ecological zones of India

(2015) Priyanka Verma et al.   JOURNAL OF BASIC MICROBIOLOGY

The Diversity and Co-occurrence Patterns of N2-Fixing Communities in a CO2-Enriched Grassland Ecosystem

(2015) Qichao Tu et al.   MICROBIAL ECOLOGY

Resolving the Phoma enigma

(2015) Q. Chen et al.   STUDIES IN MYCOLOGY

Soil microbial community variation correlates most strongly with plant species identity, followed by soil chemistry, spatial location and plant genus

(2015) J. H. Burns et al.   AoB Plants

Seedbed Preparation Techniques and Weed Control Strategies for Strip-Planting Rhizoma Peanut into Warm-Season Grass Pastures

(2014) Miguel Castillo et al.   CROP SCIENCE

Different denitrification potential of aquic brown soil in Northeast China under inorganic and organic fertilization accompanied by distinct changes of nirS- and nirK-denitrifying bacterial community

(2014) Chang Yin et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Potential of legume-based grassland-livestock systems in Europe: a review

(2014) A. Lüscher et al.   GRASS AND FORAGE SCIENCE

Biotic and Abiotic Properties Mediating Plant Diversity Effects on Soil Microbial Communities in an Experimental Grassland

(2014) Markus Lange et al.   PLoS One

Development of a Prokaryotic Universal Primer for Simultaneous Analysis of Bacteria and Archaea Using Next-Generation Sequencing

(2014) Shunsuke Takahashi et al.   PLoS One

Nutrient transfer in plant–fungal symbioses

(2014) Scott W. Behie et al.   TRENDS IN PLANT SCIENCE

Soil fungal distribution and functionality as affected by grazing and vegetation components of integrated crop–livestock agroecosystems

(2013) M. Davinic et al.   APPLIED SOIL ECOLOGY

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

(2013) Tomáš Větrovský et al.   PLoS One

Soil Environmental Conditions and Microbial Build-Up Mediate the Effect of Plant Diversity on Soil Nitrifying and Denitrifying Enzyme Activities in Temperate Grasslands

(2013) Xavier Le Roux et al.   PLoS One

Identification of Cellulose-Responsive Bacterial and Fungal Communities in Geographically and Edaphically Different Soils by Using Stable Isotope Probing

(2012) Stephanie A. Eichorst et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungal contribution to nitrous oxide emissions from cattle impacted soils

(2012) Jiří Jirout et al.   CHEMOSPHERE

Distinct Soil Bacterial Communities Revealed under a Diversely Managed Agroecosystem

(2012) Raymon S. Shange et al.   PLoS One

Incorporation of plant residue-derived carbon into the microeukaryotic community in a rice field soil revealed by DNA stable-isotope probing

(2011) Jun Murase et al.   FEMS MICROBIOLOGY ECOLOGY

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Gaiella occulta gen. nov., sp. nov., a novel representative of a deep branching phylogenetic lineage within the class Actinobacteria and proposal of Gaiellaceae fam. nov. and Gaiellales ord. nov.

(2011) Luciana Albuquerque et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Soil Resources Influence Spatial Patterns of Denitrifying Communities at Scales Compatible with Land Management

(2010) K. Enwall et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of pH and dissolved organic matter on the abundance of nirK and nirS denitrifiers in spruce forest soil

(2010) Jiří Bárta et al.   BIOGEOCHEMISTRY

Contrasting soil microbial responses to fertilizers and herbicides in a canola–barley rotation

(2010) Newton Z. Lupwayi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Various players in the nitrogen cycle: Diversity and functions of the microorganisms involved in nitrification and denitrification

(2010) Masahito Hayatsu et al.   SOIL SCIENCE AND PLANT NUTRITION

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies

(2009) Rolf Henrik Nilsson et al.   FEMS MICROBIOLOGY LETTERS

Does grassland vegetation drive soil microbial diversity?

(2009) P. Millard et al.   NUTRIENT CYCLING IN AGROECOSYSTEMS

Phylogenetic Analysis of Nitrite, Nitric Oxide, and Nitrous Oxide Respiratory Enzymes Reveal a Complex Evolutionary History for Denitrification

(2008) Christopher M. Jones et al.   MOLECULAR BIOLOGY AND EVOLUTION

Relative impacts of land-use, management intensity and fertilization upon soil microbial community structure in agricultural systems

(2008) Kamlesh Jangid et al.   SOIL BIOLOGY & BIOCHEMISTRY

Seasonal changes in the soil microbial community in a grassland plant diversity gradient four years after establishment

(2008) Maike Habekost et al.   SOIL BIOLOGY & BIOCHEMISTRY

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY

Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use

(2008) V. Acosta-Martínez et al.   SOIL BIOLOGY & BIOCHEMISTRY