Enrichment of Verrucomicrobia, Actinobacteria and Burkholderiales drives selection of bacterial community from soil by maize roots in a traditional milpa agroecosystem

Large-scale replicated field study of maize rhizosphere identifies heritable microbes

(2018) William A. Walters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Which of soil microbes is in positive correlation to yields of maize (Zea mays L.)?

(2017) Ma Zhongyou et al.   PLANT SOIL AND ENVIRONMENT

Simplified and representative bacterial community of maize roots

(2017) Ben Niu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seasonal Changes in a Maize-Based Polyculture of Central Mexico Reshape the Co-occurrence Networks of Soil Bacterial Communities

(2017) Eria A. Rebollar et al.   Frontiers in Microbiology

Fertilization Shapes Bacterial Community Structure by Alteration of Soil pH

(2017) Yuting Zhang et al.   Frontiers in Microbiology

Plant growth-promoting actinobacteria: a new strategy for enhancing sustainable production and protection of grain legumes

(2017) Arumugam Sathya et al.   3 Biotech

Plant growth-promoting actinobacteria: a new strategy for enhancing sustainable production and protection of grain legumes

(2017) Arumugam Sathya et al.   3 Biotech

Shifts in microbial communities in soil, rhizosphere and roots of two major crop systems under elevated CO2 and O3

(2017) Peng Wang et al.   Scientific Reports

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

Using Ancient Traits to Convert Soil Health into Crop Yield: Impact of Selection on Maize Root and Rhizosphere Function

(2016) Jennifer E. Schmidt et al.   Frontiers in Plant Science

Response of Soil Properties and Microbial Communities to Agriculture: Implications for Primary Productivity and Soil Health Indicators

(2016) Pankaj Trivedi et al.   Frontiers in Plant Science

Different Bacterial Populations Associated with the Roots and Rhizosphere of Rice Incorporate Plant-Derived Carbon

(2015) Marcela Hernández et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of the microaerophilic, bacteriochlorophyll a-containing bacterium Gemmatimonas phototrophica sp. nov., and emended descriptions of the genus Gemmatimonas and Gemmatimonas aurantiaca

(2015) Yonghui Zeng et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Impacts of bulk soil microbial community structure on rhizosphere microbiomes of Zea mays

(2015) Matthew G. Bakker et al.   PLANT AND SOIL

Impact of plant domestication on rhizosphere microbiome assembly and functions

(2015) Juan E. Pérez-Jaramillo et al.   PLANT MOLECULAR BIOLOGY

Wastewater Irrigation Increases the Abundance of Potentially Harmful Gammaproteobacteria in Soils in Mezquital Valley, Mexico

(2014) Melanie Broszat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Crop monoculture rather than agriculture reduces the spatial turnover of soil bacterial communities at a regional scale

(2014) Eva L. M. Figuerola et al.   ENVIRONMENTAL MICROBIOLOGY

Mapping the Diversity of Maize Races in Mexico

(2014) Hugo Perales et al.   PLoS One

The Maya milpa: fire and the legacy of living soil

(2013) Ronald Nigh et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rhizosphere: its structure, bacterial diversity and significance

(2013) Pratibha Prashar et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States

(2013) N. Fierer et al.   SCIENCE

Dynamics of the bacterial community structure in the rhizosphere of a maize cultivar

(2013) Xiangzhen Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Archaic Diet in Mesoamerica: Incentive for Milpa Development and Species Domestication

(2012) Daniel Zizumbo-Villarreal et al.   ECONOMIC BOTANY

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties

(2012) Anja B Dohrmann et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Global Biogeography and Quantitative Seasonal Dynamics of Gemmatimonadetes in Soil

(2011) Jennifer M. DeBruyn et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Verrucomicrobia subdivision 1 strains display a difference in the colonization of the leek (Allium porrum) rhizosphere

(2011) Ulisses Nunes da Rocha et al.   FEMS MICROBIOLOGY ECOLOGY

Genome Sequence of the Verrucomicrobium Opitutus terrae PB90-1, an Abundant Inhabitant of Rice Paddy Soil Ecosystems

(2011) M. W. J. van Passel et al.   JOURNAL OF BACTERIOLOGY

Genome Sequence of Chthoniobacter flavus Ellin428, an Aerobic Heterotrophic Soil Bacterium

(2011) R. Kant et al.   JOURNAL OF BACTERIOLOGY

Uncultured bacterial diversity in tropical maize (Zea mays L.) rhizosphere

(2011) Puneet Singh Chauhan et al.   JOURNAL OF BASIC MICROBIOLOGY

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Genome of Herbaspirillum seropedicae Strain SmR1, a Specialized Diazotrophic Endophyte of Tropical Grasses

(2011) Fábio O. Pedrosa et al.   PLoS Genetics

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Genetic signals of origin, spread, and introgression in a large sample of maize landraces

(2010) J. van Heerwaarden et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Linking Sequence to Function in Soil Bacteria: Sequence-Directed Isolation of Novel Bacteria Contributing to Soilborne Plant Disease Suppression

(2008) M.-S. Benitez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distantly sampled soils carry few species in common

(2008) Roberta R Fulthorpe et al.   ISME Journal