Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

Microbiome and ecotypic adaption of Holcus lanatus (L.) to extremes of its soil pH range, investigated through transcriptome sequencing

(2018) Ellen Young et al.   Microbiome

Fire modifies the phylogenetic structure of soil bacterial co-occurrence networks

(2017) Eduardo Pérez-Valera et al.   ENVIRONMENTAL MICROBIOLOGY

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Root biomass and exudates link plant diversity with soil bacterial and fungal biomass

(2017) Nico Eisenhauer et al.   Scientific Reports

The coupling of leaf, litter, and soil nutrients in warm temperate forests in northwestern China

(2017) Guangqi Zhang et al.   Scientific Reports

Mitigating greenhouse gas emissions from a subtropical Ultisol by using long-term no-tillage in combination with legume cover crops

(2016) Cimélio Bayer et al.   SOIL & TILLAGE RESEARCH

Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests

(2016) Kristin Kaiser et al.   Scientific Reports

Net effect of liming on soil organic carbon stocks: A review

(2015) R. Paradelo et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Perception and Homeostatic Control of Iron in the Rhizobia and Related Bacteria

(2015) Mark R. O'Brian   Annual Review of Microbiology

Plant Adaptation to Acid Soils: The Molecular Basis for Crop Aluminum Resistance

(2015) Leon V. Kochian et al.   Annual Review of Plant Biology

Land-use system shapes soil bacterial communities in Southeastern Amazon region

(2015) Lucas William Mendes et al.   APPLIED SOIL ECOLOGY

Land use, soil and litter chemistry drive bacterial community structures in samples of the rainforest and Cerrado (Brazilian Savannah) biomes in Southern Amazonia

(2015) Daniel Renato Lammel et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Plant growth-promoting bacteria as inoculants in agricultural soils

(2015) Rocheli de Souza et al.   GENETICS AND MOLECULAR BIOLOGY

Globally Extended Kӧppen–Geiger climate classification and temporal shifts in terrestrial climatic types

(2015) Robert V. Rohli et al.   PHYSICAL GEOGRAPHY

APLICAÇÃO SUPERFICIAL DE CALCÁRIO COM DIFERENTES TEORES DE MAGNÉSIO E GRANULOMETRIAS EM SISTEMA PLANTIO DIRETO

(2015) Maik Barbosa Rodrighero et al.   REVISTA BRASILEIRA DE CIENCIA DO SOLO

Soil nitrous oxide emissions as affected by long-term tillage, cropping systems and nitrogen fertilization in Southern Brazil

(2015) Cimélio Bayer et al.   SOIL & TILLAGE RESEARCH

Soil pH and biome are both key determinants of soil archaeal community structure

(2015) Binu M. Tripathi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long term tillage, cover crop, and fertilization effects on microbial community structure, activity: Implications for soil quality

(2015) Lilian Wanjiru Mbuthia et al.   SOIL BIOLOGY & BIOCHEMISTRY

So Many Variables: Joint Modeling in Community Ecology

(2015) David I. Warton et al.   TRENDS IN ECOLOGY & EVOLUTION

Specific microbial gene abundances and soil parameters contribute to C, N, and greenhouse gas process rates after land use change in Southern Amazonian Soils

(2015) Daniel R. Lammel et al.   Frontiers in Microbiology

Soil pH Determines Microbial Diversity and Composition in the Park Grass Experiment

(2014) Kateryna Zhalnina et al.   MICROBIAL ECOLOGY

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

(2014) Jai Ram Rideout et al.   PeerJ

Plant growth promotion in cereal and leguminous agricultural important plants: From microorganism capacities to crop production

(2013) F. Pérez-Montaño et al.   MICROBIOLOGICAL RESEARCH

Low pH, Aluminum, and Phosphorus Coordinately Regulate Malate Exudation through GmALMT1 to Improve Soybean Adaptation to Acid Soils

(2013) C. Liang et al.   PLANT PHYSIOLOGY

A new variable selection approach using Random Forests

(2012) A. Hapfelmeier et al.   COMPUTATIONAL STATISTICS & DATA ANALYSIS

Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska

(2012) Dorthe Groth Petersen et al.   ENVIRONMENTAL MICROBIOLOGY

Tropical Soil Bacterial Communities in Malaysia: pH Dominates in the Equatorial Tropics Too

(2012) Binu M. Tripathi et al.   MICROBIAL ECOLOGY

Molecular aspects of bacterial pH sensing and homeostasis

(2011) Terry A. Krulwich et al.   NATURE REVIEWS MICROBIOLOGY

Influence of Soil Characteristics on the Diversity of Bacteria in the Southern Brazilian Atlantic Forest

(2010) H. Faoro et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Statistical method on nonrandom clustering with application to somatic mutations in cancer

(2010) Jingjing Ye et al.   BMC BIOINFORMATICS

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coefficients of Determination in Logistic Regression Models—A New Proposal: The Coefficient of Discrimination

(2009) Tue Tjur   AMERICAN STATISTICIAN

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Changes in land use alter the structure of bacterial communities in Western Amazon soils

(2009) Ederson da C Jesus et al.   ISME Journal