Increased cyanophage infection at the bottom of the euphotic zone, especially in the fall

Marine phytoplankton downregulate core photosynthesis and carbon storage genes upon rapid mixed layer shallowing

(2023) Ben P. Diaz et al.   ISME Journal

Associations between picocyanobacterial ecotypes and cyanophage host genes across ocean basins and depth

(2023) Clara A. Fuchsman et al.   PeerJ

Microbial and Viral Genome and Proteome Nitrogen Demand Varies across Multiple Spatial Scales within a Marine Oxygen Minimum Zone

(2023) Daniel Muratore et al.   mSystems

Biogeochemical Dynamics in Adjacent Mesoscale Eddies of Opposite Polarity

(2022) Benedetto Barone et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Viruses affect picocyanobacterial abundance and biogeography in the North Pacific Ocean

(2022) Michael. C. G. Carlson et al.   Nature Microbiology

Temporal dynamics of total microbial biomass and particulate detritus at Station ALOHA

(2022) David M. Karl et al.   PROGRESS IN OCEANOGRAPHY

Single-cell measurements and modelling reveal substantial organic carbon acquisition by Prochlorococcus

(2022) Zhen Wu et al.   Nature Microbiology

Abundant and cosmopolitan lineage of cyanopodoviruses lacking a DNA polymerase gene

(2022) Lanlan Cai et al.   ISME Journal

Seasonal-to-decadal scale variability in primary production and particulate matter export at Station ALOHA

(2021) David M. Karl et al.   PROGRESS IN OCEANOGRAPHY

Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data

(2020) Lucas Czech et al.   BIOINFORMATICS

Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column

(2020) Elaine Luo et al.   ISME Journal

Prochlorococcus Cells Rely on Microbial Interactions Rather than on Chlorotic Resting Stages To Survive Long-Term Nutrient Starvation

(2020) Dalit Roth-Rosenberg et al.   mBio

Cyanophage host‐derived genes reflect contrasting selective pressures with depth in the oxic and anoxic water column of the Eastern Tropical North Pacific

(2020) Clara A. Fuchsman et al.   ENVIRONMENTAL MICROBIOLOGY

A single-cell polony method reveals low levels of infected Prochlorococcus in oligotrophic waters despite high cyanophage abundances

(2020) Noor Mruwat et al.   ISME Journal

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

(2019) Alexey M Kozlov et al.   BIOINFORMATICS

A novel uncultured marine cyanophage lineage with lysogenic potential linked to a putative marine Synechococcus ‘relic’ prophage

(2019) José Flores‐Uribe et al.   Environmental Microbiology Reports

Cyanobacteria and cyanophage contributions to carbon and nitrogen cycling in an oligotrophic oxygen-deficient zone

(2019) Clara A. Fuchsman et al.   ISME Journal

Cyanobacterial viruses exhibit diurnal rhythms during infection

(2019) Riyue Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resistance in marine cyanobacteria differs against specialist and generalist cyanophages

(2019) Sophia Zborowsky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expression profiling of host and virus during a coccolithophore bloom provides insights into the role of viral infection in promoting carbon export

(2018) Uri Sheyn et al.   ISME Journal

Phage-Antibiotic Synergy via Delayed Lysis

(2018) Minjin Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

(2018) Pierre Barbera et al.   SYSTEMATIC BIOLOGY

Marine microbial metagenomes sampled across space and time

(2018) Steven J. Biller et al.   Scientific Data

Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments

(2018) Paul M. Berube et al.   Scientific Data

Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes

(2018) Nathan A. Ahlgren et al.   ISME Journal

Diel cycling and long-term persistence of viruses in the ocean’s euphotic zone

(2017) Frank O. Aylward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic evolution and the self-organization of ecosystems

(2017) Rogier Braakman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Niche Partitioning of the N Cycling Microbial Community of an Offshore Oxygen Deficient Zone

(2017) Clara A. Fuchsman et al.   Frontiers in Microbiology

Quantification of diverse virus populations in the environment using the polony method

(2017) Nava Baran et al.   Nature Microbiology

A myovirus encoding both photosystem I and II proteins enhances cyclic electron flow in infected Prochlorococcus cells

(2017) Svetlana Fridman et al.   Nature Microbiology

Global genetic capacity for mixotrophy in marine picocyanobacteria

(2016) Alexis P Yelton et al.   ISME Journal

Quorum sensing influences phage infection efficiency via affecting cell population and physiological state

(2016) Xuying Qin et al.   JOURNAL OF BASIC MICROBIOLOGY

Survival ofProchlorococcusin extended darkness

(2016) Allison Coe et al.   LIMNOLOGY AND OCEANOGRAPHY

Temporal and vertical variability in picophytoplankton primary productivity in the North Pacific Subtropical Gyre

(2016) YM Rii et al.   MARINE ECOLOGY PROGRESS SERIES

Gene Expression Patterns during Light and Dark Infection of Prochlorococcus by Cyanophage

(2016) Luke R. Thompson et al.   PLoS One

The genomic content and context of auxiliary metabolic genes in marine cyanomyoviruses

(2016) Lisa T. Crummett et al.   VIROLOGY

Temporal and vertical variability in picophytoplankton primary productivity in the North Pacific Subtropical Gyre

(2016) YM Rii et al.   MARINE ECOLOGY PROGRESS SERIES

Transcriptome dynamics of a broad host-range cyanophage and its hosts

(2015) Shany Doron et al.   ISME Journal

Bacteriophage removal in various clay minerals and clay-amended soils

(2015) Jeong-Ann Park et al.   Environmental Engineering Research

The Good, the Bad, and the Tiny: A Simple, Mechanistic-Probabilistic Model of Virus-Nutrient Colimitation in Microbes

(2015) B. B. Cael   PLoS One

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

(2013) Sangita Ganesh et al.   ISME Journal

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

(2013) P. Flombaum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reconstruction of Novel Cyanobacterial Siphovirus Genomes from Mediterranean Metagenomic Fosmids

(2012) Carolina Megumi Mizuno et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomes of marine cyanopodoviruses reveal multiple origins of diversity

(2012) S. J. Labrie et al.   ENVIRONMENTAL MICROBIOLOGY

A novel lineage of myoviruses infecting cyanobacteria is widespread in the oceans

(2012) G. Sabehi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Aligning short reads to reference alignments and trees

(2011) Simon A. Berger et al.   BIOINFORMATICS

Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage-host genetic exchanges

(2011) Sijun Huang et al.   ENVIRONMENTAL MICROBIOLOGY

Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea

(2011) Rachel J Parsons et al.   ISME Journal

Light-dependent adsorption of photosynthetic cyanophages to Synechococcus  sp. WH7803

(2010) Ying Jia et al.   FEMS MICROBIOLOGY LETTERS

Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans

(2010) Rex R Malmstrom et al.   ISME Journal

Net community production in the deep euphotic zone of the subtropical North Pacific gyre from glider surveys

(2010) David Nicholson et al.   LIMNOLOGY AND OCEANOGRAPHY

Novel lineages of Prochlorococcus thrive within the oxygen minimum zone of the eastern tropical South Pacific

(2010) Paris Lavin et al.   Environmental Microbiology Reports

Viral ecology of organic and inorganic particles in aquatic systems: avenues for further research

(2009) MG Weinbauer et al.   AQUATIC MICROBIAL ECOLOGY

The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial ‘mobilome’

(2009) Matthew B. Sullivan et al.   ENVIRONMENTAL MICROBIOLOGY