Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data
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Title
Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data
Authors
Keywords
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Journal
BIOINFORMATICS
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2020-01-29
DOI
10.1093/bioinformatics/btaa070
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Note: Only part of the references are listed.- Rapid alignment-free phylogenetic identification of metagenomic sequences
- (2019) Benjamin Linard et al. BIOINFORMATICS
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- (2019) Lucas Czech et al. PLoS One
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- (2019) Metin Balaban et al. SYSTEMATIC BIOLOGY
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- (2018) Alex D. Washburne et al. Nature Microbiology
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- (2018) Pierre Barbera et al. SYSTEMATIC BIOLOGY
- Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets
- (2017) Xiaofan Zhou et al. MOLECULAR BIOLOGY AND EVOLUTION
- Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets
- (2017) Alex D. Washburne et al. PeerJ
- Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests
- (2017) Frédéric Mahé et al. Nature Ecology & Evolution
- Phylogeny-aware identification and correction of taxonomically mislabeled sequences
- (2016) Alexey M. Kozlov et al. NUCLEIC ACIDS RESEARCH
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data
- (2016) Guangchuang Yu et al. Methods in Ecology and Evolution
- Evaluating the Accuracy and Efficiency of Multiple Sequence Alignment Methods
- (2014) Muhammad Tariq Pervez et al. Evolutionary Bioinformatics
- The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
- (2013) Pelin Yilmaz et al. NUCLEIC ACIDS RESEARCH
- The phylogenetic Kantorovich-Rubinstein metric for environmental sequence samples
- (2012) Steven N. Evans et al. JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- A Format for Phylogenetic Placements
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- Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood
- (2011) Simon A. Berger et al. SYSTEMATIC BIOLOGY
- pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
- (2010) Frederick A Matsen et al. BMC BIOINFORMATICS
- Database resources of the National Center for Biotechnology Information
- (2008) E. W. Sayers et al. NUCLEIC ACIDS RESEARCH
- GenBank
- (2008) D. A. Benson et al. NUCLEIC ACIDS RESEARCH
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