Abundant and cosmopolitan lineage of cyanopodoviruses lacking a DNA polymerase gene

Newly identified HMO-2011-type phages reveal genomic diversity and biogeographic distributions of this marine viral group

(2022) Fang Qin et al.   ISME Journal

Viruses affect picocyanobacterial abundance and biogeography in the North Pacific Ocean

(2022) Michael. C. G. Carlson et al.   Nature Microbiology

Cyanophages from a less virulent clade dominate over their sister clade in global oceans

(2022) Ilia Maidanik et al.   ISME Journal

Efficient dilution-to-extinction isolation of novel virus–host model systems for fastidious heterotrophic bacteria

(2021) Holger H. Buchholz et al.   ISME Journal

Genetic engineering of marine cyanophages reveals integration but not lysogeny in T7-like cyanophages

(2021) Dror Shitrit et al.   ISME Journal

Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column

(2020) Elaine Luo et al.   ISME Journal

Phage diversity, genomics and phylogeny

(2020) Moïra B. Dion et al.   NATURE REVIEWS MICROBIOLOGY

Linking Light-Dependent Life History Traits with Population Dynamics for Prochlorococcus and Cyanophage

(2020) David Demory et al.   mSystems

Corrigendum to: IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Quantification of T4-Like and T7-Like Cyanophages Using the Polony Method Show They Are Significant Members of the Virioplankton in the North Pacific Subtropical Gyre

(2020) Svetlana Goldin et al.   Frontiers in Microbiology

Cyanophage host‐derived genes reflect contrasting selective pressures with depth in the oxic and anoxic water column of the Eastern Tropical North Pacific

(2020) Clara A. Fuchsman et al.   ENVIRONMENTAL MICROBIOLOGY

Culturing novel and abundant pelagiphages in the ocean

(2020) Zefeng Zhang et al.   ENVIRONMENTAL MICROBIOLOGY

A single-cell polony method reveals low levels of infected Prochlorococcus in oligotrophic waters despite high cyanophage abundances

(2020) Noor Mruwat et al.   ISME Journal

Viral Lysis Alters the Optical Properties and Biological Availability of Dissolved Organic Matter Derived from Prochlorococcus Picocyanobacteria

(2020) Xilin Xiao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of random forest and multiple linear regression models for estimation of soil extracellular enzyme activities in agricultural reclaimed coastal saline land

(2020) Xuefeng Xie et al.   ECOLOGICAL INDICATORS

Temporal transcriptomes of a marine cyanopodovirus and its Synechococcus host during infection

(2020) Sijun Huang et al.   MicrobiologyOpen

Marine DNA Viral Macro- and Microdiversity from Pole to Pole

(2019) Ann C. Gregory et al.   CELL

Climatic controls of decomposition drive the global biogeography of forest-tree symbioses

(2019) B. S. Steidinger et al.   NATURE

Cyanobacterial viruses exhibit diurnal rhythms during infection

(2019) Riyue Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic Analysis of the Diversity of DNA Viruses in the Surface and Deep Sea of the South China Sea

(2019) Yantao Liang et al.   Frontiers in Microbiology

Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems

(2019) Amy E. Zimmerman et al.   NATURE REVIEWS MICROBIOLOGY

Phage puppet masters of the marine microbial realm

(2018) Mya Breitbart et al.   Nature Microbiology

Pelagiphages in the Podoviridae family integrate into host genomes

(2018) Yanlin Zhao et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptomic responses of the marine cyanobacterium Prochlorococcus to viral lysis products

(2018) Xiaoting Fang et al.   ENVIRONMENTAL MICROBIOLOGY

Family A DNA Polymerase Phylogeny Uncovers Diversity and Replication Gene Organization in the Virioplankton

(2018) Daniel J. Nasko et al.   Frontiers in Microbiology

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Single-virus genomics reveals hidden cosmopolitan and abundant viruses

(2017) Francisco Martinez-Hernandez et al.   Nature Communications

Quantification of diverse virus populations in the environment using the polony method

(2017) Nava Baran et al.   Nature Microbiology

A myovirus encoding both photosystem I and II proteins enhances cyclic electron flow in infected Prochlorococcus cells

(2017) Svetlana Fridman et al.   Nature Microbiology

Viruses Inhibit CO 2 Fixation in the Most Abundant Phototrophs on Earth

(2016) Richard J. Puxty et al.   CURRENT BIOLOGY

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

(2016) Simon Roux et al.   NATURE

Virocell Metabolism: Metabolic Innovations During Host–Virus Interactions in the Ocean

(2016) Shilo Rosenwasser et al.   TRENDS IN MICROBIOLOGY

Biogeographic Variation in Host Range Phenotypes and Taxonomic Composition of Marine Cyanophage Isolates

(2016) China A. Hanson et al.   Frontiers in Microbiology

A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes

(2015) Joshua S Weitz et al.   ISME Journal

Light-driven synchrony ofProchlorococcusgrowth and mortality in the subtropical Pacific gyre

(2015) Francois Ribalet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity of planktonic microorganisms in the Arctic Ocean

(2015) Carlos Pedrós-Alió et al.   PROGRESS IN OCEANOGRAPHY

Patterns and ecological drivers of ocean viral communities

(2015) J. R. Brum et al.   SCIENCE

Biogeography of Viruses in the Sea

(2015) Cheryl-Emiliane T. Chow et al.   Annual Review of Virology

Comparative Genomic and Phylogenomic Analyses Reveal a Conserved Core Genome Shared by Estuarine and Oceanic Cyanopodoviruses

(2015) Sijun Huang et al.   PLoS One

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Host-dependent differences in abundance, composition and host range of cyanophages from the Red Sea

(2014) Naama P. Dekel-Bird et al.   ENVIRONMENTAL MICROBIOLOGY

Prochlorococcus: the structure and function of collective diversity

(2014) Steven J. Biller et al.   NATURE REVIEWS MICROBIOLOGY

The elemental composition of virus particles: implications for marine biogeochemical cycles

(2014) Luis F. Jover et al.   NATURE REVIEWS MICROBIOLOGY

Shedding new light on viral photosynthesis

(2014) Richard J. Puxty et al.   PHOTOSYNTHESIS RESEARCH

Diversity and evolutionary relationships of T7-like podoviruses infecting marine cyanobacteria

(2013) Naama P. Dekel-Bird et al.   ENVIRONMENTAL MICROBIOLOGY

Visualizing virus assembly intermediates inside marine cyanobacteria

(2013) Wei Dai et al.   NATURE

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

(2013) P. Flombaum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Marine Viruses Exploit Their Host's Two-Component Regulatory System in Response to Resource Limitation

(2012) Qinglu Zeng et al.   CURRENT BIOLOGY

Genomes of marine cyanopodoviruses reveal multiple origins of diversity

(2012) S. J. Labrie et al.   ENVIRONMENTAL MICROBIOLOGY

Bacteriophage SPP1 DNA replication strategies promote viral and disable host replication in vitro

(2012) Elena M. Seco et al.   NUCLEIC ACIDS RESEARCH

A novel lineage of myoviruses infecting cyanobacteria is widespread in the oceans

(2012) G. Sabehi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid diversification of coevolving marine Synechococcus and a virus

(2012) M. F. Marston et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Comparisons of picophytoplankton abundance, size, and fluorescence between summer and winter in northern South China Sea

(2011) Bingzhang Chen et al.   CONTINENTAL SHELF RESEARCH

Choreography of bacteriophage T7 DNA replication

(2011) Seung-Joo Lee et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage-host genetic exchanges

(2011) Sijun Huang et al.   ENVIRONMENTAL MICROBIOLOGY

Production of viruses during a spring phytoplankton bloom in the South Pacific Ocean near of New Zealand

(2011) Audrey R. Matteson et al.   FEMS MICROBIOLOGY ECOLOGY

Genomic island variability facilitates Prochlorococcus–virus coexistence

(2011) Sarit Avrani et al.   NATURE

Computational analysis of DNA replicases in double-stranded DNA viruses: relationship with the genome size

(2011) Darius Kazlauskas et al.   NUCLEIC ACIDS RESEARCH

Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism

(2011) L. R. Thompson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

(2010) Matthew B. Sullivan et al.   ENVIRONMENTAL MICROBIOLOGY

Ubiquitous cyanobacterial podoviruses in the global oceans unveiled through viral DNA polymerase gene sequences

(2010) Sijun Huang et al.   ISME Journal

Structural changes in a marine podovirus associated with release of its genome into Prochlorococcus

(2010) Xiangan Liu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A simple and efficient method for concentration of ocean viruses by chemical flocculation

(2010) Seth G. John et al.   Environmental Microbiology Reports

A Free-Standing Homing Endonuclease Targets an Intron Insertion Site in the psbA Gene of Cyanophages

(2009) Qinglu Zeng et al.   CURRENT BIOLOGY

Diverse and dynamic populations of cyanobacterial podoviruses in the Chesapeake Bay unveiled through DNA polymerase gene sequences

(2009) Feng Chen et al.   ENVIRONMENTAL MICROBIOLOGY

The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial ‘mobilome’

(2009) Matthew B. Sullivan et al.   ENVIRONMENTAL MICROBIOLOGY

Viruses manipulate the marine environment

(2009) Forest Rohwer et al.   NATURE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Prevalence of highly host-specific cyanophages in the estuarine environment

(2007) Kui Wang et al.   ENVIRONMENTAL MICROBIOLOGY