Limited historical admixture between European wildcats and domestic cats

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Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history

(2022) He Yu et al.   Nature Communications

Grey wolf genomic history reveals a dual ancestry of dogs

(2022) Anders Bergström et al.   NATURE

Redefining the timing and circumstances of the chicken's introduction to Europe and north-west Africa

(2022) Julia Best et al.   ANTIQUITY

On the use of genome‐wide data to model and date the time of anthropogenic hybridisation: An example from the Scottish wildcat

(2021) Jo Howard‐McCombe et al.   MOLECULAR ECOLOGY

Herded and hunted goat genomes from the dawn of domestication in the Zagros Mountains

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Genomic evidence for the Chinese mountain cat as a wildcat conspecific (Felis silvestris bieti) and its introgression to domestic cats

(2021) He Yu et al.   Science Advances

Range-wide patterns of human-mediated hybridisation in European wildcats

(2020) Annika Tiesmeyer et al.   CONSERVATION GENETICS

Animal domestication in the era of ancient genomics

(2020) Laurent A. F. Frantz et al.   NATURE REVIEWS GENETICS

863 genomes reveal the origin and domestication of chicken

(2020) Ming-Shan Wang et al.   CELL RESEARCH

THE INTCAL20 NORTHERN HEMISPHERE RADIOCARBON AGE CALIBRATION CURVE (0–55 CAL kBP)

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Historical introgression from wild relatives enhanced climatic adaptation and resistance to pneumonia in sheep

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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

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Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe

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Hybridization between Felis silvestris silvestris and Felis silvestris catus in two contrasted environments in France

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ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

(2018) Chao Zhang et al.   BMC BIOINFORMATICS

The evolutionary history of dogs in the Americas

(2018) Máire Ní Leathlobhair et al.   SCIENCE

Ancient goat genomes reveal mosaic domestication in the Fertile Crescent

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Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots

(2018) Daniel J. Lawson et al.   Nature Communications

Distinguishing the victim from the threat: SNP-based methods reveal the extent of introgressive hybridization between wildcats and domestic cats in Scotland and inform future in situ and ex situ management options for species restoration

(2018) Helen V. Senn et al.   Evolutionary Applications

Subsistence economy and land use strategies in the Burdur province (SW Anatolia) from prehistory to the Byzantine period

(2017) B. De Cupere et al.   QUATERNARY INTERNATIONAL

The palaeogenetics of cat dispersal in the ancient world

(2017) Claudio Ottoni et al.   Nature Ecology & Evolution

Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes

(2015) Laurent A F Frantz et al.   NATURE GENETICS

Improving access to endogenous DNA in ancient bones and teeth

(2015) Peter B. Damgaard et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

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Selective enrichment of damaged DNA molecules for ancient genome sequencing

(2014) Marie-Theres Gansauge et al.   GENOME RESEARCH

More evidence for cat taming at the Predynastic elite cemetery of Hierakonpolis (Upper Egypt)

(2014) Wim Van Neer et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Empirical calibrated radiocarbon sampler: a tool for incorporating radiocarbon-date and calibration error into Bayesian phylogenetic analyses of ancient DNA

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A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera

(2014) Andreas Wallberg et al.   NATURE GENETICS

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Isotopic reconstruction of human diet and animal husbandry practices during the Classical-Hellenistic, imperial, and Byzantine periods at Sagalassos, Turkey

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Improving ancient DNA read mapping against modern reference genomes

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Ancient Admixture in Human History

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Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

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Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

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New evidence for the establishment and management of the European fallow deer (Dama dama dama) in Roman Britain

(2010) Naomi J. Sykes et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

An Archaeological and Historical Review of the Relationships between Felids and People

(2009) Eric Faure et al.   ANTHROZOOS

The Sequence Alignment/Map format and SAMtools

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Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

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Spatio-temporal sharing between the European wildcat, the domestic cat and their hybrids

(2008) E. Germain et al.   JOURNAL OF ZOOLOGY