863 genomes reveal the origin and domestication of chicken

The wild species genome ancestry of domestic chickens

(2020) Raman Akinyanju Lawal et al.   BMC BIOLOGY

Cross-species hybridization and the origin of North African date palms

(2019) Jonathan M. Flowers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series

(2019) Antoine Fages et al.   CELL

Genetics of adaptation in modern chicken

(2019) Saber Qanbari et al.   PLoS Genetics

The evolutionary history of dogs in the Americas

(2018) Máire Ní Leathlobhair et al.   SCIENCE

Ancient goat genomes reveal mosaic domestication in the Fertile Crescent

(2018) Kevin G. Daly et al.   SCIENCE

Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds

(2018) Marina Naval-Sanchez et al.   Nature Communications

Convergent genomic signatures of domestication in sheep and goats

(2018) Florian J. Alberto et al.   Nature Communications

Was chicken domesticated in northern China? New evidence from mitochondrial genomes

(2018) Xun-He Huang et al.   Science Bulletin

Holocene hydrological and sea surface temperature changes in the northern coast of the South China Sea

(2017) Mong-Sin Wu et al.   JOURNAL OF ASIAN EARTH SCIENCES

Early middle Holocene climate oscillations recorded in the Beihuqiao Core, Yuhang, Zhejiang Province, China

(2017) Wei Ye et al.   JOURNAL OF PALEOLIMNOLOGY

An Evolutionary Genomic Perspective on the Breeding of Dwarf Chickens

(2017) Ming-Shan Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring Allele Frequency Trajectories from Ancient DNA Indicates That Selection on a Chicken Gene Coincided with Changes in Medieval Husbandry Practices

(2017) Liisa Loog et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient genomic changes associated with domestication of the horse

(2017) Pablo Librado et al.   SCIENCE

Genotype Imputation with Millions of Reference Samples

(2016) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Positive selection rather than relaxation of functional constraint drives the evolution of vision during chicken domestication

(2016) Ming-Shan Wang et al.   CELL RESEARCH

Reevaluation of early Holocene chicken domestication in northern China

(2016) Masaki Eda et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Holocene cultural history of Red jungle fowl (Gallus gallus) and its domestic descendant in East Asia

(2016) Joris Peters et al.   QUATERNARY SCIENCE REVIEWS

Genomic and archaeological evidence suggest a dual origin of domestic dogs

(2016) Laurent A. F. Frantz et al.   SCIENCE

Comparative population genomics reveals genetic basis underlying body size of domestic chickens

(2016) Ming-Shan Wang et al.   Journal of Molecular Cell Biology

A Complex Structural Variation on Chromosome 27 Leads to the Ectopic Expression of HOXB8 and the Muffs and Beard Phenotype in Chickens

(2016) Ying Guo et al.   PLoS Genetics

Out of southern East Asia: the natural history of domestic dogs across the world

(2015) Guo-Dong Wang et al.   CELL RESEARCH

Worldwide patterns of genomic variation and admixture in gray wolves

(2015) Zhenxin Fan et al.   GENOME RESEARCH

Genomic Analyses Reveal Potential Independent Adaptation to High Altitude in Tibetan Chickens

(2015) Ming-Shan Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Questioning new answers regarding Holocene chicken domestication in China

(2015) Joris Peters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

The Evolution of Animal Domestication

(2014) Greger Larson et al.   Annual Review of Ecology Evolution and Systematics

Toward better understanding of artifacts in variant calling from high-coverage samples

(2014) Heng Li   BIOINFORMATICS

Inferring human population size and separation history from multiple genome sequences

(2014) Stephan Schiffels et al.   NATURE GENETICS

Early Holocene chicken domestication in northern China

(2014) Hai Xiang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Establishing the validity of domestication genes using DNA from ancient chickens

(2014) L. Girdland Flink et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prehistoric genomes reveal the genetic foundation and cost of horse domestication

(2014) Mikkel Schubert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression

(2014) Mirte Bosse et al.   Nature Communications

Genome-Wide Patterns of Genetic Variation in Two Domestic Chickens

(2013) Wen-Lang Fan et al.   Genome Biology and Evolution

A population genetics view of animal domestication

(2013) Greger Larson et al.   TRENDS IN GENETICS

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Domestication Genomics: Evidence from Animals

(2013) Guo-Dong Wang et al.   Annual Review of Animal Biosciences

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Chicken domestication: an updated perspective based on mitochondrial genomes

(2012) Y-W Miao et al.   HEREDITY

PCAdmix: Principal Components-Based Assignment of Ancestry Along Each Chromosome in Individuals with Admixed Ancestry from Two or More Populations

(2012) Abra Brisbin et al.   HUMAN BIOLOGY

In Search of the Wild Chicken

(2012) A. Lawler   SCIENCE

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Chicken domestication: From archeology to genomics

(2011) Michèle Tixier-Boichard et al.   COMPTES RENDUS BIOLOGIES

Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies

(2011) Yong Kong   GENOMICS

g:Profiler—a web server for functional interpretation of gene lists (2011 update)

(2011) Jüri Reimand et al.   NUCLEIC ACIDS RESEARCH

GCTA: A Tool for Genome-wide Complex Trait Analysis

(2010) Jian Yang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Forest contraction in north equatorial Southeast Asia during the Last Glacial Period

(2010) C. M. Wurster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Duplication of fgfr1 Permits Fgf Signaling to Serve as a Target for Selection during Domestication

(2009) Nicolas Rohner et al.   CURRENT BIOLOGY

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

Identification of the Yellow Skin Gene Reveals a Hybrid Origin of the Domestic Chicken

(2008) Jonas Eriksson et al.   PLoS Genetics