Genomic evidence for the Chinese mountain cat as a wildcat conspecific (Felis silvestris bieti) and its introgression to domestic cats

Disentangling Timing of Admixture, Patterns of Introgression, and Phenotypic Indicators in a Hybridizing Wolf Population

(2017) Marco Galaverni et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-genome analysis of introgressive hybridization and characterization of the bovine legacy of Mongolian yaks

(2017) Ivica Medugorac et al.   NATURE GENETICS

Genome-wide signatures of complex introgression and adaptive evolution in the big cats

(2017) Henrique V. Figueiró et al.   Science Advances

The palaeogenetics of cat dispersal in the ancient world

(2017) Claudio Ottoni et al.   Nature Ecology & Evolution

Genomics of hybridization and its evolutionary consequences

(2016) Richard J. Abbott et al.   MOLECULAR ECOLOGY

Earliest “Domestic” Cats in China Identified as Leopard Cat (Prionailurus bengalensis)

(2016) Jean-Denis Vigne et al.   PLoS One

Whole-genome sequence analysis shows that two endemic species of North American wolf are admixtures of the coyote and gray wolf

(2016) B. M. vonHoldt et al.   Science Advances

Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)

(2015) Gang Li et al.   GENOME RESEARCH

Genetic Ancestry of the Extinct Javan and Bali Tigers

(2015) H.-R. Xue et al.   JOURNAL OF HEREDITY

Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes

(2015) Laurent A F Frantz et al.   NATURE GENETICS

Sympatric Asian felid phylogeography reveals a major Indochinese-Sundaic divergence

(2014) Shu-Jin Luo et al.   MOLECULAR ECOLOGY

Gibbon genome and the fast karyotype evolution of small apes

(2014) Lucia Carbone et al.   NATURE

Genetic analysis shows low levels of hybridization between African wildcats (Felis silvestris lybica) and domestic cats (F. s. catus) in South Africa

(2014) Johannes J. Le Roux et al.   Ecology and Evolution

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Genome Sequencing Highlights the Dynamic Early History of Dogs

(2014) Adam H. Freedman et al.   PLoS Genetics

Molecular Data Reveal Complex Hybridization and a Cryptic Species of Neotropical Wild Cat

(2013) Tatiane C. Trigo et al.   CURRENT BIOLOGY

Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium

(2013) P.-R. Loh et al.   GENETICS

Comparative analysis of mammalian Y chromosomes illuminates ancestral structure and lineage-specific evolution

(2013) G. Li et al.   GENOME RESEARCH

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Earliest evidence for commensal processes of cat domestication

(2013) Y. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genomics of selection in dogs and the parallel evolution between dogs and humans

(2013) Guo-dong Wang et al.   Nature Communications

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

Bayesian inference of ancient human demography from individual genome sequences

(2011) Ilan Gronau et al.   NATURE GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Modelling the dynamic biogeography of the wildcat: implications for taxonomy and conservation

(2009) A. C. Kitchener et al.   JOURNAL OF ZOOLOGY

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Molecular and Evolutionary History of Melanism in North American Gray Wolves

(2009) T. M. Anderson et al.   SCIENCE

Hybridization versus conservation: are domestic cats threatening the genetic integrity of wildcats (Felis silvestris silvestris) in Iberian Peninsula?

(2008) R. Oliveira et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

State of cat genomics

(2008) Stephen J. O’Brien et al.   TRENDS IN GENETICS