The evolutionary history of dogs in the Americas

Genomic Analyses Reveal the Influence of Geographic Origin, Migration, and Hybridization on Modern Dog Breed Development

(2017) Heidi G. Parker et al.   Cell Reports

PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

(2016) Robert Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Postglacial viability and colonization in North America’s ice-free corridor

(2016) Mikkel W. Pedersen et al.   NATURE

Genomic insights into the peopling of the Southwest Pacific

(2016) Pontus Skoglund et al.   NATURE

Genomic and archaeological evidence suggest a dual origin of domestic dogs

(2016) Laurent A. F. Frantz et al.   SCIENCE

Mitochondrial genetic diversity, selection and recombination in a canine transmissible cancer

(2016) Andrea Strakova et al.   eLife

Out of southern East Asia: the natural history of domestic dogs across the world

(2015) Guo-Dong Wang et al.   CELL RESEARCH

Ancient Wolf Genome Reveals an Early Divergence of Domestic Dog Ancestors and Admixture into High-Latitude Breeds

(2015) Pontus Skoglund et al.   CURRENT BIOLOGY

Worldwide patterns of genomic variation and admixture in gray wolves

(2015) Zhenxin Fan et al.   GENOME RESEARCH

Comparison against 186 canid whole-genome sequences reveals survival strategies of an ancient clonally transmissible canine tumor

(2015) Brennan Decker et al.   GENOME RESEARCH

Using multiple markers to elucidate the ancient, historical and modern relationships among North American Arctic dog breeds

(2015) S K Brown et al.   HEREDITY

Human and Canid Dietary Relationships: Comparative Stable Isotope Analysis From the Kodiak Archipelago, Alaska

(2015) Catherine F. West et al.   JOURNAL OF ETHNOBIOLOGY

DNA analysis of ancient dogs of the Americas: Identifying possible founding haplotypes and reconstructing population histories

(2015) Kelsey E. Witt et al.   JOURNAL OF HUMAN EVOLUTION

Massive migration from the steppe was a source for Indo-European languages in Europe

(2015) Wolfgang Haak et al.   NATURE

Population genomics of Bronze Age Eurasia

(2015) Morten E. Allentoft et al.   NATURE

Clock-like mutational processes in human somatic cells

(2015) Ludmil B Alexandrov et al.   NATURE GENETICS

Genetic structure in village dogs reveals a Central Asian domestication origin

(2015) Laura M. Shannon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic evidence for the Pleistocene and recent population history of Native Americans

(2015) M. Raghavan et al.   SCIENCE

Improving access to endogenous DNA in ancient bones and teeth

(2015) Peter B. Damgaard et al.   Scientific Reports

Human and Canid Dietary Relationships: Comparative Stable Isotope Analysis From the Kodiak Archipelago, Alaska

(2015) Catherine F. West et al.   JOURNAL OF ETHNOBIOLOGY

Ancient DNA Analysis of the Oldest Canid Species from the Siberian Arctic and Genetic Contribution to the Domestic Dog

(2015) Esther J. Lee et al.   PLoS One

The complete mitochondrial genome of the Chinese indigenous dog

(2014) Zhihui Hao et al.   Mitochondrial DNA

The complete mitochondrial genome of the Simao Chinese indigenous dog

(2014) Jun-Hui Zhao et al.   Mitochondrial DNA

Integrating mapping-, assembly- and haplotype-based approaches for calling variants in clinical sequencing applications

(2014) Andy Rimmer et al.   NATURE GENETICS

DoGSD: the dog and wolf genome SNP database

(2014) Bing Bai et al.   NUCLEIC ACIDS RESEARCH

Transmissible Dog Cancer Genome Reveals the Origin and History of an Ancient Cell Lineage

(2014) E. P. Murchison et al.   SCIENCE

The genetic prehistory of the New World Arctic

(2014) M. Raghavan et al.   SCIENCE

Genome Sequencing Highlights the Dynamic Early History of Dogs

(2014) Adam H. Freedman et al.   PLoS Genetics

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pre-Columbian origins of Native American dog breeds, with only limited replacement by European dogs, confirmed by mtDNA analysis

(2013) B. van Asch et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Complete Mitochondrial Genomes of Ancient Canids Suggest a European Origin of Domestic Dogs

(2013) O. Thalmann et al.   SCIENCE

Improving ancient DNA read mapping against modern reference genomes

(2012) Mikkel Schubert et al.   BMC GENOMICS

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

(2012) G. Ha et al.   GENOME RESEARCH

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Effect of ancient population structure on the degree of polymorphism shared between modern human populations and ancient hominins

(2012) A. Eriksson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rethinking dog domestication by integrating genetics, archeology, and biogeography

(2012) G. Larson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

Mitochondrial Capture by a Transmissible Cancer

(2011) C. A. Rebbeck et al.   SCIENCE

Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping

(2011) Amaury Vaysse et al.   PLoS Genetics

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication

(2010) Bridgett M. vonHoldt et al.   NATURE

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

ORIGINS AND EVOLUTION OF A TRANSMISSIBLE CANCER

(2009) Clare A. Rebbeck et al.   EVOLUTION

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Mitochondrial Genome DNA Analysis of the Domestic Dog: Identifying Informative SNPs Outside of the Control Region

(2009) Kristen M. Webb et al.   JOURNAL OF FORENSIC SCIENCES

mtDNA Data Indicate a Single Origin for Dogs South of Yangtze River, Less Than 16,300 Years Ago, from Numerous Wolves

(2009) J.-F. Pang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Molecular and Evolutionary History of Melanism in North American Gray Wolves

(2009) T. M. Anderson et al.   SCIENCE

Dogs, humans and island ecosystems: the distribution, antiquity and ecology of domestic dogs (Canis familiaris) on California's Channel Islands, USA

(2008) Torben C. Rick et al.   HOLOCENE

Animal use at the Postclassic Maya center of Mayapán

(2008) Marilyn A. Masson et al.   QUATERNARY INTERNATIONAL

A Mutation in Hairless Dogs Implicates FOXI3 in Ectodermal Development

(2008) Cord Drögemüller et al.   SCIENCE

The Late Pleistocene Dispersal of Modern Humans in the Americas

(2008) T. Goebel et al.   SCIENCE

Reproductive patterns in the domestic dog—A retrospective study of the Drever breed

(2008) B. Bobic Gavrilovic et al.   THERIOGENOLOGY