Single-cell spatial transcriptome reveals cell-type organization in the macaque cortex

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Cell transcriptomic atlas of the non-human primate Macaca fascicularis

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Transcriptome, connectome and neuromodulation of the primate brain

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Conservation and divergence of cortical cell organization in human and mouse revealed by MERFISH

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Molecular and cellular evolution of the primate dorsolateral prefrontal cortex

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Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding

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Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex

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A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

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Spatial and cell type transcriptional landscape of human cerebellar development

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Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization

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A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

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Human neocortical expansion involves glutamatergic neuron diversification

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Comparative cellular analysis of motor cortex in human, marmoset and mouse

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A multimodal cell census and atlas of the mammalian primary motor cortex

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Changes in the Proportion of Inhibitory Interneuron Types from Sensory to Executive Areas of the Primate Neocortex: Implications for the Origins of Working Memory Representations

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Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains

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Innovations present in the primate interneuron repertoire

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A community-based transcriptomics classification and nomenclature of neocortical cell types

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High-Spatial-Resolution Multi-Omics Sequencing via Deterministic Barcoding in Tissue

(2020) Yang Liu et al.   CELL

Differential encoding in prefrontal cortex projection neuron classes across cognitive tasks

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Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2

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Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution

(2019) Samuel G. Rodriques et al.   SCIENCE

Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH+

(2019) Chee-Huat Linus Eng et al.   NATURE

Single-cell genomics identifies cell type–specific molecular changes in autism

(2019) Dmitry Velmeshev et al.   SCIENCE

Chromatin Decondensation by FOXP2 Promotes Human Neuron Maturation and Expression of Neurodevelopmental Disease Genes

(2019) Stephanie L. Hickey et al.   Cell Reports

Distinct properties of layer 3 pyramidal neurons from prefrontal and parietal areas of the monkey neocortex

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Classification of electrophysiological and morphological neuron types in the mouse visual cortex

(2019) Nathan W. Gouwens et al.   NATURE NEUROSCIENCE

Conserved cell types with divergent features in human versus mouse cortex

(2019) Rebecca D. Hodge et al.   NATURE

High-definition spatial transcriptomics for in situ tissue profiling

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Single-cell transcriptomic profiling of the aging mouse brain

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The Mouse Cortical Connectome, Characterized by an Ultra-Dense Cortical Graph, Maintains Specificity by Distinct Connectivity Profiles

(2018) Răzvan Gămănuţ et al.   NEURON

Three-dimensional intact-tissue sequencing of single-cell transcriptional states

(2018) Xiao Wang et al.   SCIENCE

Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor

(2018) Megan Crow et al.   Nature Communications

Molecular Architecture of the Mouse Nervous System

(2018) Amit Zeisel et al.   CELL

Hierarchy of transcriptomic specialization across human cortex captured by structural neuroimaging topography

(2018) Joshua B. Burt et al.   NATURE NEUROSCIENCE

Generation of genetically engineered non-human primate models of brain function and neurological disorders

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Shared and distinct transcriptomic cell types across neocortical areas

(2018) Bosiljka Tasic et al.   NATURE

Single-nucleus and single-cell transcriptomes compared in matched cortical cell types

(2018) Trygve E. Bakken et al.   PLoS One

Spatiotemporal transcriptomic divergence across human and macaque brain development

(2018) Ying Zhu et al.   SCIENCE

Oligodendroglia: metabolic supporters of neurons

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Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain

(2017) Blue B Lake et al.   NATURE BIOTECHNOLOGY

Comprehensive transcriptome analysis of neocortical layers in humans, chimpanzees and macaques

(2017) Zhisong He et al.   NATURE NEUROSCIENCE

Neuronal cell-type classification: challenges, opportunities and the path forward

(2017) Hongkui Zeng et al.   NATURE REVIEWS NEUROSCIENCE

The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing

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Quantitative, in situ analysis of mRNAs and proteins with subcellular resolution

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Targeting Prefrontal Cortical Systems for Drug Development: Potential Therapies for Cognitive Disorders

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On the Dependency of Cellular Protein Levels on mRNA Abundance

(2016) Yansheng Liu et al.   CELL

A comprehensive transcriptional map of primate brain development

(2016) Trygve E. Bakken et al.   NATURE

Opportunities and challenges in modeling human brain disorders in transgenic primates

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Functional diversity of astrocytes in neural circuit regulation

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Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system

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Visualization and analysis of gene expression in tissue sections by spatial transcriptomics

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Reconstruction and Simulation of Neocortical Microcircuitry

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Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes

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Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq

(2015) Cathryn R Cadwell et al.   NATURE BIOTECHNOLOGY

A Large-Scale Circuit Mechanism for Hierarchical Dynamical Processing in the Primate Cortex

(2015) Rishidev Chaudhuri et al.   NEURON

Spatially resolved, highly multiplexed RNA profiling in single cells

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Principles of connectivity among morphologically defined cell types in adult neocortex

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Spatial distribution of neurons innervated by chandelier cells

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Replication of NTNG1 association in schizophrenia

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Highly Multiplexed Subcellular RNA Sequencing in Situ

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Cortical High-Density Counterstream Architectures

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STAR: ultrafast universal RNA-seq aligner

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Transcriptional Architecture of the Primate Neocortex

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Global quantification of mammalian gene expression control

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A synaptic organizing principle for cortical neuronal groups

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Informatics and Data Mining Tools and Strategies for the Human Connectome Project

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Evolution of the neocortex: a perspective from developmental biology

(2009) Pasko Rakic   NATURE REVIEWS NEUROSCIENCE