Spatial and cell type transcriptional landscape of human cerebellar development

Disrupted intraflagellar transport due to IFT74 variants causes Joubert syndrome

(2021) Minna Luo et al.   GENETICS IN MEDICINE

Jointly defining cell types from multiple single-cell datasets using LIGER

(2020) Jialin Liu et al.   Nature Protocols

Emerging connections between cerebellar development, behaviour and complex brain disorders

(2019) Aaron Sathyanesan et al.   NATURE REVIEWS NEUROSCIENCE

The single-cell transcriptional landscape of mammalian organogenesis

(2019) Junyue Cao et al.   NATURE

Childhood cerebellar tumours mirror conserved fetal transcriptional programs

(2019) Maria C. Vladoiu et al.   NATURE

Determining cell type abundance and expression from bulk tissues with digital cytometry

(2019) Aaron M. Newman et al.   NATURE BIOTECHNOLOGY

Specification of diverse cell types during early neurogenesis of the mouse cerebellum

(2019) John W Wizeman et al.   eLife

DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors

(2019) Christopher S. McGinnis et al.   Cell Systems

Spinocerebellar ataxia

(2019) Thomas Klockgether et al.   Nature Reviews Disease Primers

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity

(2019) Joshua D. Welch et al.   CELL

Resolving medulloblastoma cellular architecture by single-cell genomics

(2019) Volker Hovestadt et al.   NATURE

Redefining the Etiologic Landscape of Cerebellar Malformations

(2019) Kimberly A. Aldinger et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks

(2019) Elizabeth K. Ruzzo et al.   CELL

Conserved cell types with divergent features in human versus mouse cortex

(2019) Rebecca D. Hodge et al.   NATURE

Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes

(2019) Pamela Feliciano et al.   npj Genomic Medicine

De novo and inherited variants in ZNF292 underlie a neurodevelopmental disorder with features of autism spectrum disorder

(2019) Ghayda M. Mirzaa et al.   GENETICS IN MEDICINE

Spatiotemporal expansion of primary progenitor zones in the developing human cerebellum

(2019) Parthiv Haldipur et al.   SCIENCE

Deciphering Brain Complexity Using Single-cell Sequencing

(2019) Quanhua Mu et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

The cerebellum and cognition

(2018) Jeremy D. Schmahmann   NEUROSCIENCE LETTERS

Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding

(2018) Alexander B. Rosenberg et al.   SCIENCE

The Psychiatric Cell Map Initiative: A Convergent Systems Biological Approach to Illuminating Key Molecular Pathways in Neuropsychiatric Disorders

(2018) A. Jeremy Willsey et al.   CELL

A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum

(2018) Robert A. Carter et al.   CURRENT BIOLOGY

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Integrative functional genomic analysis of human brain development and neuropsychiatric risks

(2018) Mingfeng Li et al.   SCIENCE

The Emerging Role of Altered Cerebellar Synaptic Processing in Alzheimer’s Disease

(2018) Eriola Hoxha et al.   Frontiers in Aging Neuroscience

Prevalence and architecture of de novo mutations in developmental disorders

(2017)   NATURE

Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder

(2017) Ryan K C Yuen et al.   NATURE NEUROSCIENCE

The Cellular Phase of Alzheimer’s Disease

(2016) Bart De Strooper et al.   CELL

The genetics of cerebellar malformations

(2016) Kimberly A. Aldinger et al.   Seminars in Fetal & Neonatal Medicine

Consensus Paper: Cerebellar Development

(2015) Ketty Leto et al.   CEREBELLUM

Enabling research with human embryonic and fetal tissue resources

(2015) D. Gerrelli et al.   DEVELOPMENT

Whole-genome sequencing of quartet families with autism spectrum disorder

(2015) Ryan K C Yuen et al.   NATURE MEDICINE

Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci

(2015) Stephan J. Sanders et al.   NEURON

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

The c-Ski family member and transcriptional regulator Corl2/Skor2 promotes early differentiation of cerebellar Purkinje cells

(2014) Tomoya Nakatani et al.   DEVELOPMENTAL BIOLOGY

Transcriptional landscape of the prenatal human brain

(2014) Jeremy A. Miller et al.   NATURE

RNA-SeQC: RNA-seq metrics for quality control and process optimization

(2012) David S. DeLuca et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Range of genetic mutations associated with severe non-syndromic sporadic intellectual disability: an exome sequencing study

(2012) Anita Rauch et al.   LANCET

Pattern formation during development of the embryonic cerebellum

(2012) F. V. Dastjerdi et al.   Frontiers in Neuroanatomy

Spatio-temporal transcriptome of the human brain

(2011) Hyo Jung Kang et al.   NATURE

Preterm Delivery Disrupts the Developmental Program of the Cerebellum

(2011) Parthiv Haldipur et al.   PLoS One

Gene set enrichment analysis made simple

(2010) Rafael A Irizarry et al.   STATISTICAL METHODS IN MEDICAL RESEARCH

Cerebellum of the Premature Infant: Rapidly Developing, Vulnerable, Clinically Important

(2009) Joseph J. Volpe   JOURNAL OF CHILD NEUROLOGY

Functional and Evolutionary Insights into Human Brain Development through Global Transcriptome Analysis

(2009) Matthew B. Johnson et al.   NEURON