Human neocortical expansion involves glutamatergic neuron diversification

Comparative cellular analysis of motor cortex in human, marmoset and mouse

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Dendritic action potentials and computation in human layer 2/3 cortical neurons

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Extraction of Distinct Neuronal Cell Types from within a Genetically Continuous Population

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Comprehensive Integration of Single-Cell Data

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Distinct properties of layer 3 pyramidal neurons from prefrontal and parietal areas of the monkey neocortex

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Classification of electrophysiological and morphological neuron types in the mouse visual cortex

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Conserved cell types with divergent features in human versus mouse cortex

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Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

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Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Sparse bursts optimize information transmission in a multiplexed neural code

(2018) Richard Naud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Continuous Variation within Cell Types of the Nervous System

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The logic of single-cell projections from visual cortex

(2018) Yunyun Han et al.   NATURE

Enhanced Dendritic Compartmentalization in Human Cortical Neurons

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Shared and distinct transcriptomic cell types across neocortical areas

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h-Channels Contribute to Divergent Intrinsic Membrane Properties of Supragranular Pyramidal Neurons in Human versus Mouse Cerebral Cortex

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Large and fast human pyramidal neurons associate with intelligence

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Assessing Transcriptome Quality in Patch-Seq Datasets

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Cobl-like promotes actin filament formation and dendritic branching using only a single WH2 domain

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Massively parallel single-nucleus RNA-seq with DroNc-seq

(2017) Naomi Habib et al.   NATURE METHODS

TeraFly: real-time three-dimensional visualization and annotation of terabytes of multidimensional volumetric images

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Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

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Power to the People: Addressing Big Data Challenges in Neuroscience by Creating a New Cadre of Citizen Neuroscientists

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Single-cell RNAseq reveals cell adhesion molecule profiles in electrophysiologically defined neurons

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Cellular Taxonomy of the Mouse Striatum as Revealed by Single-Cell RNA-Seq

(2016) Ozgun Gokce et al.   Cell Reports

Unique membrane properties and enhanced signal processing in human neocortical neurons

(2016) Guy Eyal et al.   eLife

Reconstruction and Simulation of Neocortical Microcircuitry

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Dendritic and Axonal Architecture of Individual Pyramidal Neurons across Layers of Adult Human Neocortex

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Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes

(2015) János Fuzik et al.   NATURE BIOTECHNOLOGY

Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq

(2015) Cathryn R Cadwell et al.   NATURE BIOTECHNOLOGY

TReMAP: Automatic 3D Neuron Reconstruction Based on Tracing, Reverse Mapping and Assembling of 2D Projections

(2015) Zhi Zhou et al.   NEUROINFORMATICS

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins

(2015) Sarah E. Calvo et al.   NUCLEIC ACIDS RESEARCH

Extensible visualization and analysis for multidimensional images using Vaa3D

(2014) Hanchuan Peng et al.   Nature Protocols

The importance of being hierarchical

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Software for Computing and Annotating Genomic Ranges

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STAR: ultrafast universal RNA-seq aligner

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Adaptive Intrinsic Plasticity in Human Dentate Gyrus Granule Cells during Temporal Lobe Epilepsy

(2011) M. Stegen et al.   CEREBRAL CORTEX

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

(2010) Hanchuan Peng et al.   NATURE BIOTECHNOLOGY

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

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L-Measure: a web-accessible tool for the analysis, comparison and search of digital reconstructions of neuronal morphologies

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