A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

Spatially resolved transcriptomics in neuroscience

(2021) Jennie L. Close et al.   NATURE METHODS

Spatially resolved single-cell genomics and transcriptomics by imaging

(2021) Xiaowei Zhuang   NATURE METHODS

Spatially resolved transcriptomics adds a new dimension to genomics

(2021) Ludvig Larsson et al.   NATURE METHODS

Enhancer viruses for combinatorial cell-subclass-specific labeling

(2021) Lucas T. Graybuck et al.   NEURON

Interpretable factor models of single-cell RNA-seq via variational autoencoders

(2020) Valentine Svensson et al.   BIOINFORMATICS

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas

(2020) Quanxin Wang et al.   CELL

Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis

(2020) Song-Lin Ding et al.   Cell Reports

Circuit and molecular architecture of a ventral hippocampal network

(2020) Mark M. Gergues et al.   NATURE NEUROSCIENCE

Common cell type nomenclature for the mammalian brain

(2020) Jeremy A Miller et al.   eLife

Heterogeneity within classical cell types is the rule: lessons from hippocampal pyramidal neurons

(2019) Mark S. Cembrowski et al.   NATURE REVIEWS NEUROSCIENCE

DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors

(2019) Christopher S. McGinnis et al.   Cell Systems

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Evolution of neuronal identity in the cerebral cortex

(2019) Maria Antonietta Tosches et al.   CURRENT OPINION IN NEUROBIOLOGY

Neurons and networks in the entorhinal cortex: A reappraisal of the lateral and medial entorhinal subdivisions mediating parallel cortical pathways

(2019) Eirik S. Nilssen et al.   HIPPOCAMPUS

Conserved cell types with divergent features in human versus mouse cortex

(2019) Rebecca D. Hodge et al.   NATURE

Development and Arealization of the Cerebral Cortex

(2019) Cathryn R. Cadwell et al.   NEURON

Hierarchical organization of cortical and thalamic connectivity

(2019) Julie A. Harris et al.   NATURE

Neural architecture of the vertebrate brain: implications for the interaction between emotion and cognition

(2019) Luiz Pessoa et al.   NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality

(2018) Tanya L. Daigle et al.   CELL

Behavior-driven arc expression is reduced in all ventral hippocampal subfields compared to CA1, CA3, and dentate gyrus in rat dorsal hippocampus

(2018) M. K. Chawla et al.   HIPPOCAMPUS

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Nontoxic, double-deletion-mutant rabies viral vectors for retrograde targeting of projection neurons

(2018) Soumya Chatterjee et al.   NATURE NEUROSCIENCE

Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics

(2018) Kenneth D. Harris et al.   PLOS BIOLOGY

Neurogliaform cortical interneurons derive from cells in the preoptic area

(2018) Mathieu Niquille et al.   eLife

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain

(2018) Arpiar Saunders et al.   CELL

Molecular Architecture of the Mouse Nervous System

(2018) Amit Zeisel et al.   CELL

Mapping projections of molecularly defined dopamine neuron subtypes using intersectional genetic approaches

(2018) Jean-Francois Poulin et al.   NATURE NEUROSCIENCE

Parcellating Cerebral Cortex: How Invasive Animal Studies Inform Noninvasive Mapmaking in Humans

(2018) David C. Van Essen et al.   NEURON

Shared and distinct transcriptomic cell types across neocortical areas

(2018) Bosiljka Tasic et al.   NATURE

Distinct descending motor cortex pathways and their roles in movement

(2018) Michael N. Economo et al.   NATURE

Integration of gene expression and brain-wide connectivity reveals the multiscale organization of mouse hippocampal networks

(2018) Michael S. Bienkowski et al.   NATURE NEUROSCIENCE

Development and Functional Diversification of Cortical Interneurons

(2018) Lynette Lim et al.   NEURON

The subiculum is a patchwork of discrete subregions

(2018) Mark S Cembrowski et al.   eLife

Engineered AAVs for efficient noninvasive gene delivery to the central and peripheral nervous systems

(2017) Ken Y Chan et al.   NATURE NEUROSCIENCE

Spatial representation in the hippocampal formation: a history

(2017) Edvard I Moser et al.   NATURE NEUROSCIENCE

Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex

(2017) Sinisa Hrvatin et al.   NATURE NEUROSCIENCE

Neuronal cell-type classification: challenges, opportunities and the path forward

(2017) Hongkui Zeng et al.   NATURE REVIEWS NEUROSCIENCE

Hippocampal GABAergic Inhibitory Interneurons

(2017) Kenneth A. Pelkey et al.   PHYSIOLOGICAL REVIEWS

Transcriptomic and anatomic parcellation of 5-HT3AR expressing cortical interneuron subtypes revealed by single-cell RNA sequencing

(2017) Sarah Frazer et al.   Nature Communications

Somatostatin-positive interneurons in the dentate gyrus of mice provide local- and long-range septal synaptic inhibition

(2017) Mei Yuan et al.   eLife

Adult Neurogenesis in the Hippocampus: From Stem Cells to Behavior

(2016) J. Tiago Gonçalves et al.   CELL

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

(2016) Bosiljka Tasic et al.   NATURE NEUROSCIENCE

GABAergic Interneurons in the Neocortex: From Cellular Properties to Circuits

(2016) Robin Tremblay et al.   NEURON

A Designer AAV Variant Permits Efficient Retrograde Access to Projection Neurons

(2016) D. Gowanlock R. Tervo et al.   NEURON

Recruitment of inhibition and excitation across mouse visual cortex depends on the hierarchy of interconnecting areas

(2016) Rinaldo David D'Souza et al.   eLife

Role of Immediate-Early Genes in Synaptic Plasticity and Neuronal Ensembles Underlying the Memory Trace

(2016) Keiichiro Minatohara et al.   Frontiers in Molecular Neuroscience

Prox1 Regulates the Subtype-Specific Development of Caudal Ganglionic Eminence-Derived GABAergic Cortical Interneurons

(2015) G. Miyoshi et al.   JOURNAL OF NEUROSCIENCE

The neocortical circuit: themes and variations

(2015) Kenneth D Harris et al.   NATURE NEUROSCIENCE

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

(2015) A. Zeisel et al.   SCIENCE

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

Anatomy of hierarchy: Feedforward and feedback pathways in macaque visual cortex

(2013) Nikola T. Markov et al.   JOURNAL OF COMPARATIVE NEUROLOGY

GENSAT BAC Cre-Recombinase Driver Lines to Study the Functional Organization of Cerebral Cortical and Basal Ganglia Circuits

(2013) Charles R. Gerfen et al.   NEURON

PROX1: A Lineage Tracer for Cortical Interneurons Originating in the Lateral/Caudal Ganglionic Eminence and Preoptic Area

(2013) Anna Noren Rubin et al.   PLoS One

Hilar mossy cells of the dentate gyrus: a historical perspective

(2013) Helen E. Scharfman et al.   Frontiers in Neural Circuits

Software for Computing and Annotating Genomic Ranges

(2013) Michael Lawrence et al.   PLoS Computational Biology

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

OLM interneurons differentially modulate CA3 and entorhinal inputs to hippocampal CA1 neurons

(2012) Richardson N Leão et al.   NATURE NEUROSCIENCE

Mechanisms of Inhibition within the Telencephalon: “Where the Wild Things Are”

(2011) Gord Fishell et al.   Annual Review of Neuroscience

An Embedded Subnetwork of Highly Active Neurons in the Neocortex

(2010) Lina Yassin et al.   NEURON

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

(2009) Linda Madisen et al.   NATURE NEUROSCIENCE

The anatomy of memory: an interactive overview of the parahippocampal–hippocampal network

(2009) N. M. van Strien et al.   NATURE REVIEWS NEUROSCIENCE

Evolution of the neocortex: a perspective from developmental biology

(2009) Pasko Rakic   NATURE REVIEWS NEUROSCIENCE

Neuronal Activity-Induced Gadd45b Promotes Epigenetic DNA Demethylation and Adult Neurogenesis

(2009) D. K. Ma et al.   SCIENCE

Genomic Anatomy of the Hippocampus

(2008) Carol L. Thompson et al.   NEURON