JCcirc: circRNA full-length sequence assembly through integrated junction contigs

Identification of circRNAs linked to Alzheimer's disease and related dementias

(2023) Sambhavi Puri et al.   Alzheimers & Dementia

Circular RNAs: Characterization, cellular roles, and applications

(2022) Chu-Xiao Liu et al.   CELL

CircRNA: A rising star in plant biology

(2022) Pei Zhang et al.   Journal of Genetics and Genomics

Reconstruction of Full-Length circRNA Sequences Using Chimeric Alignment Information

(2022) Md. Tofazzal Hossain et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

circRNA : Regulatory factors and potential therapeutic targets in inflammatory dermatoses

(2022) Ruifeng Liu et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Deep learning models for disease-associated circRNA prediction: a review

(2022) Yaojia Chen et al.   BRIEFINGS IN BIOINFORMATICS

isoCirc catalogs full-length circular RNA isoforms in human transcriptomes

(2021) Ruijiao Xin et al.   Nature Communications

Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long

(2021) Jinyang Zhang et al.   NATURE BIOTECHNOLOGY

CircRNA in cancer: Fundamental mechanism and clinical potential

(2021) Liang Chen et al.   CANCER LETTERS

Sensitive, reliable and robust circRNA detection from RNA-seq with CirComPara2

(2021) Enrico Gaffo et al.   BRIEFINGS IN BIOINFORMATICS

Characterizing viral circRNAs and their application in identifying circRNAs in viruses

(2021) Mengting Niu et al.   BRIEFINGS IN BIOINFORMATICS

CircRNA–miRNA networks in regulating bone disease

(2021) Wei Huang et al.   JOURNAL OF CELLULAR PHYSIOLOGY

circFL-seq reveals full-length circular RNAs with rolling circular reverse transcription and nanopore sequencing

(2021) Zelin Liu et al.   eLife

CircZNF609 enhances hepatocellular carcinoma cell proliferation, metastasis, and stemness by activating the Hedgehog pathway through the regulation of miR-15a-5p/15b-5p and GLI2 expressions

(2020) Yangke He et al.   Cell Death & Disease

Modulation of circRNA Metabolism by m6A Modification

(2020) Gaia Di Timoteo et al.   Cell Reports

The new function of circRNA: translation

(2020) Y. Shi et al.   Clinical & Translational Oncology

The mechanism and detection of alternative splicing events in circular RNAs

(2020) Xiaohan Li et al.   PeerJ

Reconstruction of full-length circular RNAs enables isoform-level quantification

(2019) Yi Zheng et al.   Genome Medicine

De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers

(2019) Martin Hölzer et al.   GigaScience

The biogenesis, biology and characterization of circular RNAs

(2019) Lasse S. Kristensen et al.   NATURE REVIEWS GENETICS

Identifying and Characterizing circRNA-Protein Interaction

(2017) William W Du et al.   Theranostics

Diverse alternative back-splicing and alternative splicing landscape of circular RNAs

(2016) Xiao-Ou Zhang et al.   GENOME RESEARCH

Full-length sequence assembly reveals circular RNAs with diverse non-GT/AG splicing signals in rice

(2016) Chu-Yu Ye et al.   RNA Biology

Specific identification and quantification of circular RNAs from sequencing data

(2015) Jun Cheng et al.   BIOINFORMATICS

Polyester: simulating RNA-seq datasets with differential transcript expression

(2015) Alyssa C. Frazee et al.   BIOINFORMATICS

CIRI: an efficient and unbiased algorithm for de novo circular RNA identification

(2015) Yuan Gao et al.   GENOME BIOLOGY

Complementary Sequence-Mediated Exon Circularization

(2014) Xiao-Ou Zhang et al.   CELL

circRNA Biogenesis Competes with Pre-mRNA Splicing

(2014) Reut Ashwal-Fluss et al.   MOLECULAR CELL

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

De novo assembly and analysis of RNA-seq data

(2010) Gordon Robertson et al.   NATURE METHODS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH