Characterizing viral circRNAs and their application in identifying circRNAs in viruses

Kaposi’s Sarcoma-Associated Herpesvirus-Encoded circRNAs Are Expressed in Infected Tumor Tissues and Are Incorporated into Virions

(2020) Bizunesh Abere et al.   mBio

Basic polar and hydrophobic properties are the main characteristics that affect the binding of transcription factors to methylation sites

(2020) Zijie Shen et al.   BIOINFORMATICS

Host-derived circular RNAs display proviral activities in Hepatitis C virus-infected cells

(2020) Tzu-Chun Chen et al.   PLoS Pathogens

Identifying Circular RNA and Predicting Its Regulatory Interactions by Machine Learning

(2020) Guishan Zhang et al.   Frontiers in Genetics

Identification of virus-encoded circular RNA

(2019) Jun-ting Huang et al.   VIROLOGY

circDeep: deep learning approach for circular RNA classification from other long non-coding RNA

(2019) Mohamed Chaabane et al.   BIOINFORMATICS

HBV-related hepatocarcinogenesis: the role of signalling pathways and innovative ex vivo research models

(2019) Joseph Torresi et al.   BMC CANCER

Plasma hsa_circ_0027089 is a diagnostic biomarker for hepatitis B virus-related hepatocellular carcinoma

(2019) Kai Zhu et al.   CARCINOGENESIS

The biogenesis, biology and characterization of circular RNAs

(2019) Lasse S. Kristensen et al.   NATURE REVIEWS GENETICS

Knockdown of EBV-encoded circRNA circRPMS1 suppresses nasopharyngeal carcinoma cell proliferation and metastasis through sponging multiple miRNAs

(2019) Qianwen Liu et al.   Cancer Management and Research

Association of N6-methyladenosine with viruses and related diseases

(2019) Fang Wu et al.   Virology Journal

Detection and profiling of circular RNAs in uninfected and maize Iranian mosaic virus-infected maize

(2018) Abozar Ghorbani et al.   PLANT SCIENCE

The Epstein Barr virus circRNAome

(2018) Nathan Ungerleider et al.   PLoS Pathogens

Discriminating cirRNAs from other lncRNAs using a hierarchical extreme learning machine (H-ELM) algorithm with feature selection

(2017) Lei Chen et al.   MOLECULAR GENETICS AND GENOMICS

Diverse alternative back-splicing and alternative splicing landscape of circular RNAs

(2016) Xiao-Ou Zhang et al.   GENOME RESEARCH

Detecting circular RNAs: bioinformatic and experimental challenges

(2016) Linda Szabo et al.   NATURE REVIEWS GENETICS

The biogenesis and emerging roles of circular RNAs

(2016) Ling-Ling Chen   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA

(2015) Kate M Broadbent et al.   BMC GENOMICS

Exon Skipping Is Correlated with Exon Circularization

(2015) Steven Kelly et al.   JOURNAL OF MOLECULAR BIOLOGY

PredcircRNA: computational classification of circular RNA from other long non-coding RNA using hybrid features

(2015) Xiaoyong Pan et al.   Molecular BioSystems

Widespread noncoding circular RNAs in plants

(2015) Chu-Yu Ye et al.   NEW PHYTOLOGIST

Comparison of circular RNA prediction tools

(2015) Thomas B. Hansen et al.   NUCLEIC ACIDS RESEARCH

Transcriptome-wide investigation of circular RNAs in rice

(2015) Tingting Lu et al.   RNA

CIRI: an efficient and unbiased algorithm for de novo circular RNA identification

(2015) Yuan Gao et al.   GENOME BIOLOGY

circBase: a database for circular RNAs

(2014) Petar Glažar et al.   RNA

Genome-wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation

(2014) Jakub O. Westholm et al.   Cell Reports

GraphProt: modeling binding preferences of RNA-binding proteins

(2014) Daniel Maticzka et al.   GENOME BIOLOGY

Natural RNA circles function as efficient microRNA sponges

(2013) Thomas B. Hansen et al.   NATURE

Circular RNAs are a large class of animal RNAs with regulatory potency

(2013) Sebastian Memczak et al.   NATURE

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Most mammalian mRNAs are conserved targets of microRNAs

(2008) R. C. Friedman et al.   GENOME RESEARCH