Alterations in gut microbiota and host transcriptome of patients with coronary artery disease

Identification of MKNK1 and TOP3A as ovarian endometriosis risk-associated genes using integrative genomic analyses and functional experiments

(2023) Yizhou Huang et al.   Computational and Structural Biotechnology Journal

Association of plasma propionate concentration with coronary artery disease in a large cross-sectional study

(2023) Nikolaos Pagonas et al.   Frontiers in Cardiovascular Medicine

Gut-derived short-chain fatty acids bridge cardiac and systemic metabolism and immunity in heart failure

(2023) Anzhu Wang et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

DEHP exposure elevated cardiovascular risk in obese mice by disturbing the arachidonic acid metabolism of gut microbiota

(2023) Xuyang Chai et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Butyrate potentiates Enterococcus faecalis lipoteichoic acid-induced inflammasome activation via histone deacetylase inhibition

(2023) Ok-Jin Park et al.   Cell Death Discovery

Integrating single-cell sequencing data with GWAS summary statistics reveals CD16+monocytes and memory CD8+T cells involved in severe COVID-19

(2022) Yunlong Ma et al.   Genome Medicine

Integrated multi-omics data analysis identifies a novel genetics-risk gene of IRF4 associated with prognosis of oral cavity cancer

(2022) YanL v et al.   Current Bioinformatics

Increasing the diversity of dietary fibers in a daily-consumed bread modifies gut microbiota and metabolic profile in subjects at cardiometabolic risk

(2022) Harimalala Ranaivo et al.   Gut Microbes

Dysbiosis of Gut Microbiota and Metabolite Phenylacetylglutamine in Coronary Artery Disease Patients With Stent Stenosis

(2022) Chen Fang et al.   Frontiers in Cardiovascular Medicine

Gut Microbially Produced Indole-3-Propionic Acid Inhibits Atherosclerosis by Promoting Reverse Cholesterol Transport and Its Deficiency Is Causally Related to Atherosclerotic Cardiovascular Disease

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The short-chain fatty acid butyrate accelerates vascular calcification via regulation of histone deacetylases and NF-κB signaling

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Gut microbiota combined with metabolites reveals unique features of acute myocardial infarction patients different from stable coronary artery disease

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(2022) Tongtong Hu et al.   AGEING RESEARCH REVIEWS

Malonate Promotes Adult Cardiomyocyte Proliferation and Heart Regeneration

(2021) Jiyoung Bae et al.   CIRCULATION

Integrative Genomics Analysis Reveals a 21q22.11 Locus Contributing Risk to COVID-19

(2021) Yunlong Ma et al.   HUMAN MOLECULAR GENETICS

Integration of summary data from GWAS and eQTL studies identified novel risk genes for coronary artery disease

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COVID-19 Quarantine Reveals Behavioral Changes Effect on Myopia Progression

(2021) Liangde Xu et al.   OPHTHALMOLOGY

Apolipoprotein E genotype, lifestyle and coronary artery disease: Gene-environment interaction analyses in the UK Biobank population

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Butyrate directly decreases human gut lamina propria CD4 T cell function through histone deacetylase (HDAC) inhibition and GPR43 signaling

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Dysbiosis of Gut Microbiota in Patients With Acute Myocardial Infarction

(2021) Ying Han et al.   Frontiers in Microbiology

Mixed Lineage Kinase Domain-Like Pseudokinase (MLKL) Gene Expression in Human Atherosclerosis with and without Type 2 Diabetes Mellitus

(2021) Amany Mohamed Kamal et al.   Iranian Biomedical Journal

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(2021) Frans J. Beerkens et al.   Nature Reviews Cardiology

A Six-Day, Lifestyle-Based Immersion Program Mitigates Cardiovascular Risk Factors and Induces Shifts in Gut Microbiota, Specifically Lachnospiraceae, Ruminococcaceae, Faecalibacterium prausnitzii: A Pilot Study

(2021) Angelica P. Ahrens et al.   Nutrients

Single cell sequencing analysis identifies genetics-modulated ORMDL3+ cholangiocytes having higher metabolic effects on primary biliary cholangitis

(2021) Bingyu Xiang et al.   JOURNAL OF NANOBIOTECHNOLOGY

Butyrate improves cardiac function and sympathetic neural remodeling following myocardial infarction in rats

(2020) Xiaojie Jiang et al.   CANADIAN JOURNAL OF PHYSIOLOGY AND PHARMACOLOGY

Gut Microbiome-Based Diagnostic Model to Predict Coronary Artery Disease

(2020) Ying-Ying Zheng et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The gut microbiome in coronary artery disease and heart failure: Current knowledge and future directions

(2020) Marius Trøseid et al.   EBioMedicine

Updated review of research on the gut microbiota and their relation to depression in animals and human beings

(2020) Zhongli Yang et al.   MOLECULAR PSYCHIATRY

Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences

(2020) Franziska Wemheuer et al.   Environmental Microbiome

The pseudokinase MLKL regulates hepatic insulin sensitivity independently of inflammation

(2019) Haixia Xu et al.   Molecular Metabolism

Trimethyllysine, a trimethylamine N-oxide precursor, provides near- and long-term prognostic value in patients presenting with acute coronary syndromes

(2019) Xinmin S Li et al.   EUROPEAN HEART JOURNAL

WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs

(2019) Yuxing Liao et al.   NUCLEIC ACIDS RESEARCH

Alterations in the gut microbiome and metabolism with coronary artery disease severity

(2019) Honghong Liu et al.   Microbiome

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(2019) Andrew D. Steen et al.   ISME Journal

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Integrative genomic analysis identified common regulatory networks underlying the correlation between coronary artery disease and plasma lipid levels

(2019) Liuying Chen et al.   BMC Cardiovascular Disorders

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(2018) Thomas S.B. Schmidt et al.   CELL

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(2018) Patrice D Cani   GUT

Gut Microbiota Signature in Heart Failure Defined From Profiling of 2 Independent Cohorts

(2018) Martin Kummen et al.   JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY

Dysbiosis signatures of gut microbiota in coronary artery disease

(2018) Qi Zhu et al.   PHYSIOLOGICAL GENOMICS

The intestinal microbiota associated with cardiac valve calcification differs from that of coronary artery disease

(2018) Zuheng Liu et al.   ATHEROSCLEROSIS

GW29-e1224 The analysis of the diversity of the intestinal flora in patients with acute myocardial infarction

(2018) Baihua Zhou et al.   JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY

Dietary metabolism, the gut microbiome, and heart failure

(2018) W. H. Wilson Tang et al.   Nature Reviews Cardiology

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Identification of 64 Novel Genetic Loci Provides an Expanded View on the Genetic Architecture of Coronary Artery Disease

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Ror2 signaling regulates Golgi structure and transport through IFT20 for tumor invasiveness

(2017) Michiru Nishita et al.   Scientific Reports

Network-Based Identification and Prioritization of Key Regulators of Coronary Artery Disease LociSignificance

(2016) Yuqi Zhao et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

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(2016) Kaizhen Liu et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

RIPK3 deficiency or catalytically inactive RIPK1 provides greater benefit than MLKL deficiency in mouse models of inflammation and tissue injury

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Plasma ceramides predict cardiovascular death in patients with stable coronary artery disease and acute coronary syndromes beyond LDL-cholesterol

(2016) Reijo Laaksonen et al.   EUROPEAN HEART JOURNAL

Plasma Trimethylamine N -Oxide, a Gut Microbe–Generated Phosphatidylcholine Metabolite, Is Associated With Atherosclerotic Burden

(2016) Vichai Senthong et al.   JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY

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(2016) Justin L. Sonnenburg et al.   NATURE

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(2016) Ricardo Weinlich et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

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(2016) Torbjørn Rognes et al.   PeerJ

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(2015) Andrew B. Shreiner et al.   CURRENT OPINION IN GASTROENTEROLOGY

In silico analyses of metagenomes from human atherosclerotic plaque samples

(2015) Suparna Mitra et al.   Microbiome

Activity of Protein Kinase RIPK3 Determines Whether Cells Die by Necroptosis or Apoptosis

(2014) K. Newton et al.   SCIENCE

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

A gut-heart connection in cardiometabolic regulation

(2013) Alessia Buglioni et al.   NATURE MEDICINE

Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis

(2013) Robert A Koeth et al.   NATURE MEDICINE

Atherosclerosis and interferon-γ: New insights and therapeutic targets

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(2012) Catherine A. Lozupone et al.   NATURE

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

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QIIME allows analysis of high-throughput community sequencing data

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Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

(2010) A. K. Benson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

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Increased serum YKL-40 and C-reactive protein levels are associated with angiographic lesion progression in patients with coronary artery disease

(2009) Jian Lei Zheng et al.   ATHEROSCLEROSIS

The role of antimicrobial peptides in cardiovascular physiology and disease

(2009) Yifeng Li   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Plasma α-Defensin Is Associated with Cardiovascular Morbidity and Mortality in Type 1 Diabetic Patients

(2008) Gowsini Joseph et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM