Potential of genomic selection for growth, meat content and colour traits in mixed-family breeding designs for the Pacific oyster Crassostrea gigas

Genomic selection and its research progress in aquaculture breeding

(2022) Hailiang Song et al.   Reviews in Aquaculture

Evaluating cost-effective genotyping strategies for genomic selection in oysters

(2022) Thomas A. Delomas et al.   AQUACULTURE

Genomic selection for improvement of growth traits in triangle sail mussel (Hyriopsis cumingii)

(2022) Zhiyan Wang et al.   AQUACULTURE

Genetic parameters for Crassostrea virginica and their application to family-based breeding in the mid-Atlantic, USA

(2021) Standish K. Allen et al.   AQUACULTURE

Construction of a chromosome‐level genome and variation map for the Pacific oyster Crassostrea gigas

(2021) Haigang Qi et al.   Molecular Ecology Resources

Prediction Accuracies of Genomic Selection for Nine Commercially Important Traits in the Portuguese Oyster (Crassostrea angulata) Using DArT-Seq Technology

(2021) Sang V. Vu et al.   Genes

Optimizing hatchery practices for genetic improvement of marine bivalves

(2021) Jennifer C. Nascimento‐Schulze et al.   Reviews in Aquaculture

Molecular Pathways and Pigments Underlying the Colors of the Pearl Oyster Pinctada margaritifera var. cumingii (Linnaeus 1758)

(2021) Pierre-Louis Stenger et al.   Genes

A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas

(2021) Carolina Peñaloza et al.   GigaScience

Strategies to improve the accuracy and reduce costs of genomic prediction in aquaculture species

(2021) Hailiang Song et al.   Evolutionary Applications

Genomic signatures of artificial selection in the Pacific oyster, Crassostrea gigas

(2021) Boyang Hu et al.   Evolutionary Applications

Relationship Between Shell Color and Growth and Survival Traits in the Pacific Oyster Crassostrea gigas

(2021) Ziqiang Han et al.   Journal of Ocean University of China

Genome-wide association study toward efficient selection breeding of resistance to Vibrio alginolyticus in Pacific oyster, Crassostrea gigas

(2021) Ben Yang et al.   AQUACULTURE

Benefits of genomic evaluation in aquaculture breeding programs with separate rearing of families

(2021) Silvia García-Ballesteros et al.   AQUACULTURE

Genomic survey of edible cockle ( Cerastoderma edule ) in the Northeast Atlantic: A baseline for sustainable management of its wild resources

(2021) Manuel Vera et al.   Evolutionary Applications

Genome-wide analysis of acute low salinity tolerance in the eastern oyster Crassostrea virginica and potential of genomic selection for trait improvement

(2021) Alexandra J McCarty et al.   G3-Genes Genomes Genetics

Potential of genomic selection for improvement of resistance to ostreid herpesvirus in Pacific oyster ( Crassostrea gigas )

(2020) A. P. Gutierrez et al.   ANIMAL GENETICS

Genomic Prediction Using Low Density Marker Panels in Aquaculture: Performance Across Species, Traits, and Genotyping Platforms

(2020) Christina Kriaridou et al.   Frontiers in Genetics

Harnessing genomics to fast-track genetic improvement in aquaculture

(2020) Ross D. Houston et al.   NATURE REVIEWS GENETICS

The unique UV-Vis reflection features of the nacre of Hyriopsis cumingii shells, and its formation mechanisms

(2020) Jun YAN et al.   DYES AND PIGMENTS

Genetic architecture and genomic selection of female reproduction traits in rainbow trout

(2020) J. D’Ambrosio et al.   BMC GENOMICS

Potential for Genetic Improvement of Resistance to Perkinsus olseni in the Manila Clam, Ruditapes philippinarum, Using DNA Parentage Assignment and Mass Spawning

(2020) Morgan Smits et al.   Frontiers in Veterinary Science

Evo-devo of shell colour in gastropods and bivalves

(2020) Suzanne V Saenko et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Genomic Selection in Aquaculture: Application, Limitations and Opportunities With Special Reference to Marine Shrimp and Pearl Oysters

(2019) Kyall R. Zenger et al.   Frontiers in Genetics

APIS: An auto‐adaptive parentage inference software that tolerates missing parents

(2019) Ronan Griot et al.   Molecular Ecology Resources

Nanopore Sequencing and De Novo Assembly of a Black-Shelled Pacific Oyster (Crassostrea gigas) Genome

(2019) Xiaotong Wang et al.   Frontiers in Genetics

Estimating heritability for meat composition traits in the golden shell strain of Pacific oyster (Crassostrea gigas)

(2019) Sai Wan et al.   AQUACULTURE

Accuracy of genotype imputation and genomic predictions in a two-generation farmed Atlantic salmon population using high-density and low-density SNP panels

(2018) Grazyella M. Yoshida et al.   AQUACULTURE

Accuracy of BLUP breeding values in a factorial mating design with mixed families and marker-based parentage assignment in rainbow trout Oncorhynchus mykiss

(2018) Pierrick Haffray et al.   AQUACULTURE

Heritability estimate for mantle edge pigmentation and correlation with shell pigmentation in the white-shell strain of Pacific oyster, Crassostrea gigas

(2018) De Xing et al.   AQUACULTURE

Genetic by Environment Interactions for Harvest Traits of the Pacific Oyster Crassostrea gigas (Thunberg) across Different Environments on the West Coast, USA

(2018) Claudio Manoel Rodrigues De Melo et al.   JOURNAL OF SHELLFISH RESEARCH

A Genome-Wide Association Study for Host Resistance to Ostreid Herpesvirus in Pacific Oysters ( Crassostrea gigas )

(2018) Alejandro P. Gutierrez et al.   G3-Genes Genomes Genetics

Genome-Wide Association and Genomic Selection for Resistance to Amoebic Gill Disease in Atlantic Salmon

(2018) Diego Robledo et al.   G3-Genes Genomes Genetics

Genomic Tools and Selective Breeding in Molluscs

(2018) Christopher M. Hollenbeck et al.   Frontiers in Genetics

Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata

(2018) Pierre-Alexandre Gagnaire et al.   Genome Biology and Evolution

Genomic Selection for Growth Traits in Pacific Oyster (Crassostrea gigas): Potential of Low-Density Marker Panels for Breeding Value Prediction

(2018) Alejandro P. Gutierrez et al.   Frontiers in Genetics

Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas ) revealed by genome-wide SNP data

(2018) David L. J. Vendrami et al.   Evolutionary Applications

Estimates of Linkage Disequilibrium and Effective Population Size in Wild and Selected Populations of the Pacific Oyster Using Single-nucleotide Polymorphism Markers

(2017) Xiaoxiao Zhong et al.   JOURNAL OF THE WORLD AQUACULTURE SOCIETY

Estimates of Heritability for Growth and Shell Color Traits and Their Genetic Correlations in the Black Shell Strain of Pacific Oyster Crassostrea gigas

(2017) Lan Xu et al.   MARINE BIOTECHNOLOGY

Development of a Medium Density Combined-Species SNP Array for Pacific and European Oysters ( Crassostrea gigas and Ostrea edulis )

(2017) Alejandro P. Gutierrez et al.   G3-Genes Genomes Genetics

Construction and evaluation of a high-density SNP array for the Pacific oyster (Crassostrea gigas)

(2017) Haigang Qi et al.   PLoS One

Improvements in desirable traits of the Pacific oyster, Crassostrea gigas , as a result of five generations of selection on the West Coast, USA

(2016) Claudio Manoel Rodrigues de Melo et al.   AQUACULTURE

Molluscan shell colour

(2016) Suzanne T. Williams   BIOLOGICAL REVIEWS

Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array

(2015) Hsin-Yuan Tsai et al.   BMC GENOMICS

Genetic improvement for disease resistance in oysters: A review

(2015) Lionel Dégremont et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Signatures of selection in tilapia revealed by whole genome resequencing

(2015) Jun Hong Xia et al.   Scientific Reports

Second-Generation Linkage Maps for the Pacific Oyster Crassostrea gigas Reveal Errors in Assembly of Genome Scaffolds

(2015) Dennis Hedgecock et al.   G3-Genes Genomes Genetics

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Development and evaluation of the first high-throughput SNP array for common carp (Cyprinus carpio)

(2014) Jian Xu et al.   BMC GENOMICS

Responses to two-way selection on growth in mass-spawned F1 progeny of Argopecten irradians concentricus (Say)

(2014) Hui Wang et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Development of SNP-genotyping arrays in two shellfish species

(2014) S. Lapègue et al.   Molecular Ecology Resources

Parentage assignment with genomic markers: a major advance for understanding and exploiting genetic variation of quantitative traits in farmed aquatic animals

(2014) Marc Vandeputte et al.   Frontiers in Genetics

Heritability estimates for growth-related traits in the Pacific oyster (Crassostrea gigas) using a molecular pedigree

(2013) Ning Kong et al.   AQUACULTURE RESEARCH

A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection

(2013) David B Jones et al.   BMC GENOMICS

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Selection response and realized heritability for growth in three stocks of the Pacific oyster Crassostrea gigas

(2011) Qi Li et al.   FISHERIES SCIENCE

Estimating the heritability for growth-related traits in the pearl oyster, Pinctada fucata martensii (Dunker)

(2010) Hui Wang et al.   AQUACULTURE RESEARCH

Optimizing mating schemes in fish breeding

(2010) E. D'Agaro et al.   Italian Journal of Animal Science

Mapping genes for complex traits in domestic animals and their use in breeding programmes

(2009) Michael E. Goddard et al.   NATURE REVIEWS GENETICS

Heritability of shell pigmentation in the Pacific oyster, Crassostrea gigas

(2008) Sanford Evans et al.   AQUACULTURE

Performance of Genomic Selection in Mice

(2008) A. Legarra et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE