Next Generation Sequencing of Actinobacteria for the Discovery of Novel Natural Products
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Next Generation Sequencing of Actinobacteria for the Discovery of Novel Natural Products
Authors
Keywords
-
Journal
Marine Drugs
Volume 14, Issue 4, Pages 78
Publisher
MDPI AG
Online
2016-04-13
DOI
10.3390/md14040078
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A genomics-led approach to deciphering the mechanism of thiotetronate antibiotic biosynthesis
- (2016) W. Tao et al. Chemical Science
- Biosynthesis of the Novel Macrolide Antibiotic Anthracimycin
- (2015) Silke Alt et al. ACS Chemical Biology
- Genome-Directed Lead Discovery: Biosynthesis, Structure Elucidation, and Biological Evaluation of Two Families of Polyene Macrolactams against Trypanosoma brucei
- (2015) Christopher J. Schulze et al. ACS Chemical Biology
- Identification and Heterologous Expression of the Chaxamycin Biosynthesis Gene Cluster from Streptomyces leeuwenhoekii
- (2015) Jean Franco Castro et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Misassembly detection using paired-end sequence reads and optical mapping data
- (2015) Martin D. Muggli et al. BIOINFORMATICS
- The Streptomyces leeuwenhoekii genome: de novo sequencing and assembly in single contigs of the chromosome, circular plasmid pSLE1 and linear plasmid pSLE2
- (2015) Juan Pablo Gomez-Escribano et al. BMC GENOMICS
- One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly
- (2015) Sergey Koren et al. CURRENT OPINION IN MICROBIOLOGY
- Combining Mass Spectrometric Metabolic Profiling with Genomic Analysis: A Powerful Approach for Discovering Natural Products from Cyanobacteria
- (2015) Karin Kleigrewe et al. JOURNAL OF NATURAL PRODUCTS
- The Sound of Silence: Activating Silent Biosynthetic Gene Clusters in Marine Microorganisms
- (2015) F. Reen et al. Marine Drugs
- The marine actinomycete genus Salinispora: a model organism for secondary metabolite discovery
- (2015) Paul R. Jensen et al. NATURAL PRODUCT REPORTS
- Minimum Information about a Biosynthetic Gene cluster
- (2015) Marnix H Medema et al. Nature Chemical Biology
- The re-emergence of natural products for drug discovery in the genomics era
- (2015) Alan L. Harvey et al. NATURE REVIEWS DRUG DISCOVERY
- antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
- (2015) Tilmann Weber et al. NUCLEIC ACIDS RESEARCH
- Activating a Cryptic Ansamycin Biosynthetic Gene Cluster To Produce Three New Naphthalenic Octaketide Ansamycins with n-Pentyl and n-Butyl Side Chains
- (2015) Shanren Li et al. ORGANIC LETTERS
- Targeted metagenomics as a tool to tap into marine natural product diversity for the discovery and production of drug candidates
- (2015) Marla Trindade et al. Frontiers in Microbiology
- NxRepair: error correction inde novosequence assembly using Nextera mate pairs
- (2015) Rebecca R. Murphy et al. PeerJ
- Nanopore-based Fourth-generation DNA Sequencing Technology
- (2015) Yanxiao Feng et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Analysis of novel kitasatosporae reveals significant evolutionary changes in conserved developmental genes between Kitasatospora and Streptomyces
- (2014) Geneviève Girard et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Streptomyces leeuwenhoekii sp. nov., the producer of chaxalactins and chaxamycins, forms a distinct branch in Streptomyces gene trees
- (2014) Kanungnid Busarakam et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Insights into naturally minimised Streptomyces albus J1074 genome
- (2014) Nestor Zaburannyi et al. BMC GENOMICS
- Direct Capture and Heterologous Expression of Salinispora Natural Product Genes for the Biosynthesis of Enterocin
- (2014) Bailey Bonet et al. JOURNAL OF NATURAL PRODUCTS
- Natural Products from Mangrove Actinomycetes
- (2014) Dong-Bo Xu et al. Marine Drugs
- Recently publishedStreptomycesgenome sequences
- (2014) James Harrison et al. Microbial Biotechnology
- Genetic Basis for the Biosynthesis of the Pharmaceutically Important Class of Epoxyketone Proteasome Inhibitors
- (2013) Michelle Schorn et al. ACS Chemical Biology
- Comparative genomics of actinomycetes with a focus on natural product biosynthetic genes
- (2013) James R Doroghazi et al. BMC GENOMICS
- Identification and Characterization of the Cuevaene A Biosynthetic Gene Cluster inStreptomycessp. LZ35
- (2013) Yuhai Jiang et al. CHEMBIOCHEM
- Design-based re-engineering of biosynthetic gene clusters: plug-and-play in practice
- (2013) Hans-Jörg Frasch et al. CURRENT OPINION IN BIOTECHNOLOGY
- The Genome Sequence of Streptomyces lividans 66 Reveals a Novel tRNA-Dependent Peptide Biosynthetic System within a Metal-Related Genomic Island
- (2013) Pablo Cruz-Morales et al. Genome Biology and Evolution
- Cloning and Analysis of the Planosporicin Lantibiotic Biosynthetic Gene Cluster of Planomonospora alba
- (2013) E. J. Sherwood et al. JOURNAL OF BACTERIOLOGY
- Exploitation of the Streptomyces coelicolor A3(2) genome sequence for discovery of new natural products and biosynthetic pathways
- (2013) Gregory L. Challis JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Heterologous expression of natural product biosynthetic gene clusters in Streptomyces coelicolor: from genome mining to manipulation of biosynthetic pathways
- (2013) Juan Pablo Gomez-Escribano et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Recent Advances in the Discovery and Development of Marine Microbial Natural Products
- (2013) Zhi-Qiang Xiong et al. Marine Drugs
- Pharmaceutically active secondary metabolites of marine actinobacteria
- (2013) Panchanathan Manivasagan et al. MICROBIOLOGICAL RESEARCH
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- PATRIC, the bacterial bioinformatics database and analysis resource
- (2013) Alice R. Wattam et al. NUCLEIC ACIDS RESEARCH
- Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data
- (2013) Lauren M. Bragg et al. PLoS Computational Biology
- Genomic and transcriptomic insights into the thermo-regulated biosynthesis of validamycin in Streptomyces hygroscopicus 5008
- (2012) Hang Wu et al. BMC GENOMICS
- A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
- (2012) Michael Quail et al. BMC GENOMICS
- Performance comparison of benchtop high-throughput sequencing platforms
- (2012) Nicholas J Loman et al. NATURE BIOTECHNOLOGY
- Hybrid error correction and de novo assembly of single-molecule sequencing reads
- (2012) Sergey Koren et al. NATURE BIOTECHNOLOGY
- Posttranslational β-methylation and macrolactamidination in the biosynthesis of the bottromycin complex of ribosomal peptide antibiotics
- (2012) Juan Pablo Gomez-Escribano et al. Chemical Science
- Bio-mining the microbial treasures of the ocean: New natural products
- (2011) Johannes F. Imhoff et al. BIOTECHNOLOGY ADVANCES
- Biosynthesis and Regulation of Grisemycin, a New Member of the Linaridin Family of Ribosomally Synthesized Peptides Produced by Streptomyces griseus IFO 13350
- (2011) J. Claesen et al. JOURNAL OF BACTERIOLOGY
- Sequence-specific error profile of Illumina sequencers
- (2011) Kensuke Nakamura et al. NUCLEIC ACIDS RESEARCH
- Identification of a bioactive 51-membered macrolide complex by activation of a silent polyketide synthase in Streptomyces ambofaciens
- (2011) L. Laureti et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Approaches to Capturing and Designing Biologically Active Small Molecules Produced by Uncultured Microbes
- (2010) Jörn Piel Annual Review of Microbiology
- Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology
- (2010) Thomas D. Otto et al. BIOINFORMATICS
- A window into third-generation sequencing
- (2010) E. E. Schadt et al. HUMAN MOLECULAR GENETICS
- Marine Metagenomics: New Tools for the Study and Exploitation of Marine Microbial Metabolism
- (2010) Jonathan Kennedy et al. Marine Drugs
- Immense Essence of Excellence: Marine Microbial Bioactive Compounds
- (2010) Ira Bhatnagar et al. Marine Drugs
- SBSPKS: structure based sequence analysis of polyketide synthases
- (2010) Swadha Anand et al. NUCLEIC ACIDS RESEARCH
- Genome mining and genetic analysis of cypemycin biosynthesis reveal an unusual class of posttranslationally modified peptides
- (2010) J. Claesen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Microbisporicin gene cluster reveals unusual features of lantibiotic biosynthesis in actinomycetes
- (2010) L. C. Foulston et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Dissecting tunicamycin biosynthesis by genome mining: cloning and heterologous expression of a minimal gene cluster
- (2010) Filip J. Wyszynski et al. Chemical Science
- Engineering Streptomyces coelicolor for heterologous expression of secondary metabolite gene clusters
- (2010) Juan Pablo Gomez-Escribano et al. Microbial Biotechnology
- Computational Biology Methods and Their Application to the Comparative Genomics of Endocellular Symbiotic Bacteria of Insects
- (2009) Jennifer Commins et al. BIOLOGICAL PROCEDURES ONLINE
- Strategies for the Discovery of New Natural Products by Genome Mining
- (2009) Malek Zerikly et al. CHEMBIOCHEM
- Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes
- (2009) Iwanka Kozarewa et al. NATURE METHODS
- Renaissance in antibacterial discovery from actinomycetes
- (2008) R BALTZ CURRENT OPINION IN PHARMACOLOGY
- Genome Sequence of the Streptomycin-Producing Microorganism Streptomyces griseus IFO 13350
- (2008) Y. Ohnishi et al. JOURNAL OF BACTERIOLOGY
- Accurate whole human genome sequencing using reversible terminator chemistry
- (2008) David R. Bentley et al. NATURE
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search