Misassembly detection using paired-end sequence reads and optical mapping data
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Misassembly detection using paired-end sequence reads and optical mapping data
Authors
Keywords
-
Journal
BIOINFORMATICS
Volume 31, Issue 12, Pages i80-i88
Publisher
Oxford University Press (OUP)
Online
2015-06-14
DOI
10.1093/bioinformatics/btv262
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Computational methods for optical mapping
- (2015) Lee Mendelowitz et al. GigaScience
- SAGE: String-overlap Assembly of GEnomes
- (2014) Lucian Ilie et al. BMC BIOINFORMATICS
- Automated ensemble assembly and validation of microbial genomes
- (2014) Sergey Koren et al. BMC BIOINFORMATICS
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Whole-genome analyses resolve early branches in the tree of life of modern birds
- (2014) E. D. Jarvis et al. SCIENCE
- Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies
- (2014) David B Neale et al. GENOME BIOLOGY
- High-coverage sequencing and annotated assemblies of the budgerigar genome
- (2014) Ganeshkumar Ganapathy et al. GigaScience
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Reference-assisted chromosome assembly
- (2013) J. Kim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Assembly and Validation of the Genome of the Nonmodel Basal Angiosperm Amborella
- (2013) S. Chamala et al. SCIENCE
- REAPR: a universal tool for genome assembly evaluation
- (2013) Martin Hunt et al. GENOME BIOLOGY
- Peering into peer-review at GigaScience
- (2013) Scott C Edmunds GigaScience
- SEQuel: improving the accuracy of genome assemblies
- (2012) R. Ronen et al. BIOINFORMATICS
- SCARPA: scaffolding reads with practical algorithms
- (2012) N. Donmez et al. BIOINFORMATICS
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
- (2012) Y. Peng et al. BIOINFORMATICS
- AGORA: Assembly Guided by Optical Restriction Alignment
- (2012) Henry C Lin et al. BMC BIOINFORMATICS
- Statistical Significance of Optical Map Alignments
- (2012) Deepayan Sarkar et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- ART: a next-generation sequencing read simulator
- (2011) Weichun Huang et al. BIOINFORMATICS
- Optical mapping of DNA: Single-molecule-based methods for mapping genomes
- (2011) Robert K. Neely et al. BIOPOLYMERS
- How to apply de Bruijn graphs to genome assembly
- (2011) Phillip E C Compeau et al. NATURE BIOTECHNOLOGY
- LOCAS – A Low Coverage Assembly Tool for Resequencing Projects
- (2011) Juliane D. Klein et al. PLoS One
- Meraculous: De Novo Genome Assembly with Short Paired-End Reads
- (2011) Jarrod A. Chapman et al. PLoS One
- Creating a Buzz About Insect Genomes
- (2011) G. E. Robinson et al. SCIENCE
- High-resolution human genome structure by single-molecule analysis
- (2010) B. Teague et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- ABySS: A parallel assembler for short read sequence data
- (2009) J. T. Simpson et al. GENOME RESEARCH
- De novo assembly of human genomes with massively parallel short read sequencing
- (2009) R. Li et al. GENOME RESEARCH
- REBASE—a database for DNA restriction and modification: enzymes, genes and genomes
- (2009) Richard J. Roberts et al. NUCLEIC ACIDS RESEARCH
- Lineage-Specific Biology Revealed by a Finished Genome Assembly of the Mouse
- (2009) Deanna M. Church et al. PLOS BIOLOGY
- A Single Molecule Scaffold for the Maize Genome
- (2009) Shiguo Zhou et al. PLoS Genetics
- Assisted assembly: how to improve a de novo genome assembly by using related species
- (2009) Sante Gnerre et al. GENOME BIOLOGY
- Aggressive assembly of pyrosequencing reads with mates
- (2008) Jason R. Miller et al. BIOINFORMATICS
- Scaffolding and validation of bacterial genome assemblies using optical restriction maps
- (2008) N. Nagarajan et al. BIOINFORMATICS
- Sequencing of natural strains of Arabidopsis thaliana with short reads
- (2008) S. Ossowski et al. GENOME RESEARCH
- ALLPATHS: De novo assembly of whole-genome shotgun microreads
- (2008) J. Butler et al. GENOME RESEARCH
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Genome assembly forensics: finding the elusive mis-assembly
- (2008) Adam M Phillippy et al. GENOME BIOLOGY
- Short read fragment assembly of bacterial genomes
- (2007) M. J. Chaisson et al. GENOME RESEARCH
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now