An Introduction to Nanopore Sequencing: Past, Present, and Future Considerations

Controlled Synthesis of Perforated Oxide Nanosheets with High Density Nanopores Showing Superior Water Purification Performance

(2022) Yongtao Li et al.   ACS Applied Materials & Interfaces

The complete sequence of a human genome

(2022) Sergey Nurk et al.   SCIENCE

Comparison of rRNA depletion methods for efficient bacterial mRNA sequencing

(2022) Anika Wahl et al.   Scientific Reports

Single-molecule DNA sequencing using two-dimensional Ti2C(OH)2 MXene nanopores: A first-principles investigation

(2022) Jariyanee Prasongkit et al.   Nano Research

Nanopore sequencing of a monkeypox virus strain isolated from a pustular lesion in the Central African Republic

(2022) Mathias Vandenbogaert et al.   Scientific Reports

Controllable Shrinking Fabrication of Solid-State Nanopores

(2022) Xin Lei et al.   Micromachines

TEM based applications in solid state nanopores: From fabrication to liquid in-situ bio-imaging

(2022) Muhammad Sajeer P et al.   MICRON

Nanopore-based technologies beyond DNA sequencing

(2022) Yi-Lun Ying et al.   Nature Nanotechnology

Tracking SARS-COV-2 variants using Nanopore sequencing in Ukraine in 2021

(2022) Anna Yakovleva et al.   Scientific Reports

High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing

(2021) Søren M. Karst et al.   NATURE METHODS

Nanopore Sequencing Resolves Elusive Long Tandem-Repeat Regions in Mitochondrial Genomes

(2021) Liina Kinkar et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Nanopore Flongle Sequencing as a Rapid, Single-Specimen Clinical Test for Fusion Detection

(2021) William R. Jeck et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long

(2021) Jinyang Zhang et al.   NATURE BIOTECHNOLOGY

Next-generation sequencing technologies: An overview

(2021) Taishan Hu et al.   HUMAN IMMUNOLOGY

Forensic nanopore sequencing of STRs and SNPs using Verogen’s ForenSeq DNA Signature Prep Kit and MinION

(2021) Zi-Lin Ren et al.   INTERNATIONAL JOURNAL OF LEGAL MEDICINE

Genome-Wide Methylation Mapping Using Nanopore Sequencing Technology Identifies Novel Tumor Suppressor Genes in Hepatocellular Carcinoma

(2021) Colin F. Davenport et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Nanopore long-read RNA-seq and absolute quantification delineate transcription dynamics in early embryo development of an insect pest

(2021) Anthony Bayega et al.   Scientific Reports

Nanopore base calling on the edge

(2021) Peter Perešíni et al.   BIOINFORMATICS

Nanopore sequencing for Mycobacterium tuberculosis : a critical review of the literature, new developments and future opportunities

(2021) Anzaan Dippenaar et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Nanopore sequencing of single-cell transcriptomes with scCOLOR-seq

(2021) Martin Philpott et al.   NATURE BIOTECHNOLOGY

TERA-Seq: true end-to-end sequencing of native RNA molecules for transcriptome characterization

(2021) Fadia Ibrahim et al.   NUCLEIC ACIDS RESEARCH

Cas9 targeted enrichment of mobile elements using nanopore sequencing

(2021) Torrin L. McDonald et al.   Nature Communications

Direct Nanopore Sequencing of Individual Full Length tRNA Strands

(2021) Niki K. Thomas et al.   ACS Nano

Nanopore sequencing of a forensic combined STR and SNP multiplex

(2021) Olivier Tytgat et al.   Forensic Science International-Genetics

Nanopore sequencing technology, bioinformatics and applications

(2021) Yunhao Wang et al.   NATURE BIOTECHNOLOGY

Bottom-up fabrication of a proteasome–nanopore that unravels and processes single proteins

(2021) Shengli Zhang et al.   Nature Chemistry

Screening by deep sequencing reveals mediators of microRNA tailing in C. elegans

(2021) Karl-Frédéric Vieux et al.   NUCLEIC ACIDS RESEARCH

Accurate expression quantification from nanopore direct RNA sequencing with NanoCount

(2021) Josie Gleeson et al.   NUCLEIC ACIDS RESEARCH

Nanopore sequencing of RNA and cDNA molecules in Escherichia coli

(2021) Felix Grünberger et al.   RNA

Comparative evaluation of Nanopore polishing tools for microbial genome assembly and polishing strategies for downstream analysis

(2021) Jin Young Lee et al.   Scientific Reports

circFL-seq reveals full-length circular RNAs with rolling circular reverse transcription and nanopore sequencing

(2021) Zelin Liu et al.   eLife

Beyond sequencing: machine learning algorithms extract biology hidden in Nanopore signal data

(2021) Yuk Kei Wan et al.   TRENDS IN GENETICS

Comparing Current Noise in Biological and Solid-State Nanopores

(2020) Alessio Fragasso et al.   ACS Nano

Microfluidic Systems Applied in Solid-State Nanopore Sensors

(2020) Jiye Fu et al.   Micromachines

A dual-constriction biological nanopore resolves homonucleotide sequences with high fidelity

(2020) Sander E. Van der Verren et al.   NATURE BIOTECHNOLOGY

Long-read human genome sequencing and its applications

(2020) Glennis A. Logsdon et al.   NATURE REVIEWS GENETICS

Partner independent fusion gene detection by multiplexed CRISPR-Cas9 enrichment and long read nanopore sequencing

(2020) Christina Stangl et al.   Nature Communications

High throughput error corrected Nanopore single cell transcriptome sequencing

(2020) Kevin Lebrigand et al.   Nature Communications

Cryo-EM structure of the nonameric CsgG-CsgF complex and its implications for controlling curli biogenesis in Enterobacteriaceae

(2020) Manfeng Zhang et al.   PLOS BIOLOGY

Methodologies for Transcript Profiling Using Long-Read Technologies

(2020) Spyros Oikonomopoulos et al.   Frontiers in Genetics

Solid-state nanopore sensors

(2020) Liang Xue et al.   Nature Reviews Materials

Interaction dynamics and site-specific electronic recognition of DNA-nicks with 2D solid-state nanopores

(2020) Nagendra Athreya et al.   npj 2D Materials and Applications

Highly accurate long-read HiFi sequencing data for five complex genomes

(2020) Ting Hon et al.   Scientific Data

Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen

(2019) Daniel P. Depledge et al.   Nature Communications

Selective Single Molecule Nanopore Sensing of microRNA Using PNA Functionalized Magnetic Core-shell Fe3O4-Au Nanoparticles

(2019) Hao Wang et al.   ANALYTICAL CHEMISTRY

Quiet Outer Membrane Protein G (OmpG) Nanopore for Biosensing

(2019) Raghavendar Reddy Sanganna Gari et al.   ACS Sensors

3′ Uridylation Confers miRNAs with Non-canonical Target Repertoires

(2019) Acong Yang et al.   MOLECULAR CELL

A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes

(2019) Charlotte Soneson et al.   Nature Communications

Single-Stranded DNA Translocation Recordings through Solid-State Nanopores on Glass Chips at 10 MHz Measurement Bandwidth

(2019) Chen-Chi Chien et al.   ACS Nano

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

(2019) Aaron M. Wenger et al.   NATURE BIOTECHNOLOGY

Single-Molecule Analysis and Engineering of DNA Motors

(2019) Sonisilpa Mohapatra et al.   CHEMICAL REVIEWS

Third-Generation Sequencing in the Clinical Laboratory: Exploring the Advantages and Challenges of Nanopore Sequencing

(2019) Lauren M. Petersen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Nanopore native RNA sequencing of a human poly(A) transcriptome

(2019) Rachael E. Workman et al.   NATURE METHODS

Efficient and specific oligo-based depletion of rRNA

(2019) Amelie J. Kraus et al.   Scientific Reports

Controlled Focused Ion Beam Milling of Composite Solid State Nanopore Arrays for Molecule Sensing

(2019) Péter Fürjes   Micromachines

Solid-state nanopore fabrication by automated controlled breakdown

(2019) Matthew Waugh et al.   Nature Protocols

Nanopore sequencing and assembly of a human genome with ultra-long reads

(2018) Miten Jain et al.   NATURE BIOTECHNOLOGY

Comprehensive multi-center assessment of small RNA-seq methods for quantitative miRNA profiling

(2018) Maria D Giraldez et al.   NATURE BIOTECHNOLOGY

Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning

(2018) Haotian Teng et al.   GigaScience

Graphene-based nanopore approaches for DNA sequencing: A literature review

(2018) Asma Wasfi et al.   BIOSENSORS & BIOELECTRONICS

A nanopore sequencing–based assay for rapid detection of gene fusions

(2018) William R. Jeck et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Surface Charge Density-Dependent DNA Capture through Polymer Planar Nanopores

(2018) Zheng Jia et al.   ACS Applied Materials & Interfaces

Digital Data Storage Using DNA Nanostructures and Solid-State Nanopores

(2018) Kaikai Chen et al.   NANO LETTERS

Grain boundary-mediated nanopores in molybdenum disulfide grown by chemical vapor deposition

(2017) Kenan Elibol et al.   Nanoscale

Establishment and cryptic transmission of Zika virus in Brazil and the Americas

(2017) N. R. Faria et al.   NATURE

Nanopore sequencing meets epigenetics

(2017) Michael C Schatz   NATURE METHODS

Mapping DNA methylation with high-throughput nanopore sequencing

(2017) Arthur C Rand et al.   NATURE METHODS

Revealing dynamics of helicase translocation on single-stranded DNA using high-resolution nanopore tweezers

(2017) Jonathan M. Craig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Helicase SPRNTing through the nanopore

(2017) Colleen C. Caldwell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nanopore Sensing

(2016) Wenqing Shi et al.   ANALYTICAL CHEMISTRY

High Throughput Sequencing: An Overview of Sequencing Chemistry

(2016) Sheetal Ambardar et al.   INDIAN JOURNAL OF MICROBIOLOGY

Real-time, portable genome sequencing for Ebola surveillance

(2016) Joshua Quick et al.   NATURE

Nanopore development at Oxford Nanopore

(2016) Clive G Brown et al.   NATURE BIOTECHNOLOGY

Three decades of nanopore sequencing

(2016) David Deamer et al.   NATURE BIOTECHNOLOGY

Graphene nanodevices for DNA sequencing

(2016) Stephanie J. Heerema et al.   Nature Nanotechnology

Discrimination of oligonucleotides of different lengths with a wild-type aerolysin nanopore

(2016) Chan Cao et al.   Nature Nanotechnology

Cryo-EM structure of aerolysin variants reveals a novel protein fold and the pore-formation process

(2016) Ioan Iacovache et al.   Nature Communications

Fabrication of Low Noise Borosilicate Glass Nanopores for Single Molecule Sensing

(2016) Jayesh A. Bafna et al.   PLoS One

DNA Translocation in Nanometer Thick Silicon Nanopores

(2015) Julio A. Rodríguez-Manzo et al.   ACS Nano

Integrating nanopore sensors within microfluidic channel arrays using controlled breakdown

(2015) Radin Tahvildari et al.   LAB ON A CHIP

Subangstrom single-molecule measurements of motor proteins using a nanopore

(2015) Ian M Derrington et al.   NATURE BIOTECHNOLOGY

Development of solid-state nanopore fabrication technologies

(2015) Tao Deng et al.   Science Bulletin

The evolution of nanopore sequencing

(2015) Yue Wang et al.   Frontiers in Genetics

PacBio Sequencing and Its Applications

(2015) Anthony Rhoads et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

proovread : large-scale high-accuracy PacBio correction through iterative short read consensus

(2014) Thomas Hackl et al.   BIOINFORMATICS

Nanopore Fabrication by Controlled Dielectric Breakdown

(2014) Harold Kwok et al.   PLoS One

Differentiation of Short, Single-Stranded DNA Homopolymers in Solid-State Nanopores

(2013) Kimberly Venta et al.   ACS Nano

Single Protein Molecule Detection by Glass Nanopores

(2013) Wenhong Li et al.   ACS Nano

Molecule-hugging graphene nanopores

(2013) S. Garaj et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recent trends in nanopores for biotechnology

(2012) Daniel H Stoloff et al.   CURRENT OPINION IN BIOTECHNOLOGY

Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase

(2012) Elizabeth A Manrao et al.   NATURE BIOTECHNOLOGY

Atomic-Scale Electron-Beam Sculpting of Near-Defect-Free Graphene Nanostructures

(2011) Bo Song et al.   NANO LETTERS

Nanopore-based detection of circulating microRNAs in lung cancer patients

(2011) Yong Wang et al.   Nature Nanotechnology

Nucleotide Discrimination with DNA Immobilized in the MspA Nanopore

(2011) Elizabeth A. Manrao et al.   PLoS One

High-throughput DNA sequencing - concepts and limitations

(2010) Martin Kircher et al.   BIOESSAYS

Polymeric Nanopore Membranes for Hydrophobicity-Based Separations by Conformal Initiated Chemical Vapor Deposition

(2010) Ayse Asatekin et al.   NANO LETTERS

Controlling nanopore size, shape and stability

(2010) Michiel van den Hout et al.   NANOTECHNOLOGY

DNA translocation through an array of kinked nanopores

(2010) Zhu Chen et al.   NATURE MATERIALS

Principles and challenges of genome-wide DNA methylation analysis

(2010) Peter W. Laird   NATURE REVIEWS GENETICS

Multiple Base-Recognition Sites in a Biological Nanopore: Two Heads are Better than One

(2009) David Stoddart et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

The potential and challenges of nanopore sequencing

(2008) Daniel Branton et al.   NATURE BIOTECHNOLOGY

Outer membrane protein G: Engineering a quiet pore for biosensing

(2008) M. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA