Genome-Wide Methylation Mapping Using Nanopore Sequencing Technology Identifies Novel Tumor Suppressor Genes in Hepatocellular Carcinoma
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Title
Genome-Wide Methylation Mapping Using Nanopore Sequencing Technology Identifies Novel Tumor Suppressor Genes in Hepatocellular Carcinoma
Authors
Keywords
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Journal
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
Volume 22, Issue 8, Pages 3937
Publisher
MDPI AG
Online
2021-04-12
DOI
10.3390/ijms22083937
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Note: Only part of the references are listed.- Pan-cancer analysis of whole genomes
- (2020) NATURE
- The nf-core framework for community-curated bioinformatics pipelines
- (2020) Philip A. Ewels et al. NATURE BIOTECHNOLOGY
- CXCL12/CXCR4 axis in the microenvironment of solid tumors: A critical mediator of metastasis
- (2020) Keywan Mortezaee LIFE SCIENCES
- A negative reciprocal regulatory axis between cyclin D1 and HNF4α modulates cell cycle progression and metabolism in the liver
- (2020) Heng Wu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2020) Geoffrey W. Abbott Frontiers in Physiology
- Hexokinase inhibition using D-Mannoheptulose enhances oncolytic newcastle disease virus-mediated killing of breast cancer cells
- (2020) Ahmed Ghdhban Al-Ziaydi et al. Cancer Cell International
- Molecular structure of human synaptonemal complex protein SYCE1
- (2019) Orla M. Dunne et al. CHROMOSOMA
- MiR-552 promotes the proliferation, migration and EMT of hepatocellular carcinoma cells by inhibiting AJAP1 expression
- (2019) Weiqing Qu et al. JOURNAL OF CELLULAR AND MOLECULAR MEDICINE
- GATA5 inhibits hepatocellular carcinoma cells malignant behaviours by blocking expression of reprogramming genes
- (2019) Haipeng Feng et al. JOURNAL OF CELLULAR AND MOLECULAR MEDICINE
- Molecular and cellular regulation of human glucokinase
- (2019) Shawn M. Sternisha et al. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
- Parathyroid hormone‐like hormone plays a dual role in neuroblastoma depending on PTH 1R expression
- (2019) Marta García et al. Molecular Oncology
- Lgr5+ pericentral hepatocytes are self-maintained in normal liver regeneration and susceptible to hepatocarcinogenesis
- (2019) Chow Hiang Ang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The mRNA-binding Protein TTP/ZFP36 in Hepatocarcinogenesis and Hepatocellular Carcinoma
- (2019) Tarek Kröhler et al. Cancers
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- Methylation-Mediated Silencing of GATA5 Gene Suppresses Cholangiocarcinoma Cell Proliferation and Metastasis
- (2018) Peng Liu et al. Translational Oncology
- Cycles of gene expression and genome response during mammalian tissue regeneration
- (2018) Leonor Rib et al. Epigenetics & Chromatin
- High-fidelity CRISPR/Cas9- based gene-specific hydroxymethylation rescues gene expression and attenuates renal fibrosis
- (2018) Xingbo Xu et al. Nature Communications
- Nanopore sequencing meets epigenetics
- (2017) Michael C Schatz NATURE METHODS
- Detecting DNA cytosine methylation using nanopore sequencing
- (2017) Jared T Simpson et al. NATURE METHODS
- Loss of the novel mitochondrial protein FAM210B promotes metastasis via PDK4-dependent metabolic reprogramming
- (2017) Shujuan Sun et al. Cell Death & Disease
- Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA
- (2017) Ksenia Skvortsova et al. Epigenetics & Chromatin
- Quantitative proteomics reveal the anti-tumour mechanism of the carbohydrate recognition domain of Galectin-3 in Hepatocellular carcinoma
- (2017) Mingchao Wang et al. Scientific Reports
- Environment Dictates Dependence on Mitochondrial Complex I for NAD+ and Aspartate Production and Determines Cancer Cell Sensitivity to Metformin
- (2016) Dan Y. Gui et al. Cell Metabolism
- Treatment with MAPKAP2 (MK2) inhibitor and DNA methylation inhibitor, 5-aza dC, synergistically triggers apoptosis in hepatocellular carcinoma (HCC) via tristetraprolin (TTP)
- (2016) Doan Duy Hai Tran et al. CELLULAR SIGNALLING
- The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms
- (2016) René Dreos et al. NUCLEIC ACIDS RESEARCH
- Reduced Expression of Adherens Junctions Associated Protein 1 Predicts Recurrence of Hepatocellular Carcinoma After Curative Hepatectomy
- (2015) Kazuhiro Ezaka et al. ANNALS OF SURGICAL ONCOLOGY
- Embryonal Fyn-associated substrate (EFS) and CASS4: The lesser-known CAS protein family members
- (2015) Alexander Deneka et al. GENE
- Identification of a Novel Coregulator, SH3YL1, That Interacts With the Androgen Receptor N-Terminus
- (2015) Alicia M. Blessing et al. MOLECULAR ENDOCRINOLOGY
- Exome sequencing of hepatocellular carcinomas identifies new mutational signatures and potential therapeutic targets
- (2015) Kornelius Schulze et al. NATURE GENETICS
- Depletion of three combined THOC5 mRNA export protein target genes synergistically induces human hepatocellular carcinoma cell death
- (2015) S Saran et al. ONCOGENE
- Loss of GATA5 expression due to gene promoter methylation induces growth and colony formation of hepatocellular carcinoma cells
- (2015) LEI XIA et al. Oncology Letters
- Twist promotes reprogramming of glucose metabolism in breast cancer cells through PI3K/AKT and p53 signaling pathways
- (2015) Li Yang et al. Oncotarget
- AJAP1 is Dysregulated at an Early Stage of Gliomagenesis and Suppresses Invasion Through Cytoskeleton Reorganization
- (2014) Lei Han et al. CNS Neuroscience & Therapeutics
- Tet3-Mediated Hydroxymethylation of Epigenetically Silenced Genes Contributes to Bone Morphogenic Protein 7-Induced Reversal of Kidney Fibrosis
- (2014) B. Tampe et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Characterization of monocarboxylate transporter activity in hepatocellular carcinoma
- (2014) Venâncio A Alves WORLD JOURNAL OF GASTROENTEROLOGY
- Genome-Wide Methylation Analysis and Epigenetic Unmasking Identify Tumor Suppressor Genes in Hepatocellular Carcinoma
- (2013) Kate Revill et al. GASTROENTEROLOGY
- p21 promotes sustained liver regeneration and hepatocarcinogenesis in chronic cholestatic liver injury
- (2013) Silke Marhenke et al. GUT
- The SLC16 gene family – Structure, role and regulation in health and disease
- (2013) Andrew P. Halestrap MOLECULAR ASPECTS OF MEDICINE
- Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands
- (2013) J. Schreiber et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-wide DNA methylation profiles in hepatocellular carcinoma
- (2012) Jing Shen et al. HEPATOLOGY
- N-linked glycosylation of proline-rich membrane anchor (PRiMA) is not required for assembly and trafficking of globular tetrameric acetylcholinesterase
- (2012) Wallace K.B. Chan et al. NEUROSCIENCE LETTERS
- EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era
- (2012) René Dreos et al. NUCLEIC ACIDS RESEARCH
- Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
- (2011) Felix Krueger et al. BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Global cancer statistics
- (2011) Ahmedin Jemal et al. CA-A CANCER JOURNAL FOR CLINICIANS
- Diethylnitrosamine-induced hepatocarcinogenesis is suppressed in lecithin:retinol acyltransferase-deficient mice primarily through retinoid actions immediately after carcinogen administration
- (2011) Y. Shirakami et al. CARCINOGENESIS
- The Assembly of Proline-rich Membrane Anchor (PRiMA)-linked Acetylcholinesterase Enzyme
- (2011) Vicky P. Chen et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Methylation Profile of Single Hepatocytes Derived from Hepatitis B Virus-Related Hepatocellular Carcinoma
- (2011) Ran Tao et al. PLoS One
- Accelerated liver regeneration and hepatocarcinogenesis in mice overexpressing serine-45 mutant β-catenin
- (2010) Kari N. Nejak-Bowen et al. HEPATOLOGY
- Acetylcholinesterase, a key prognostic predictor for hepatocellular carcinoma, suppresses cell growth and induces chemosensitization
- (2010) Yingjun Zhao et al. HEPATOLOGY
- The role of signaling pathways in the development and treatment of hepatocellular carcinoma
- (2010) S Whittaker et al. ONCOGENE
- The Behaviour of 5-Hydroxymethylcytosine in Bisulfite Sequencing
- (2010) Yun Huang et al. PLoS One
- Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1
- (2009) M. Tahiliani et al. SCIENCE
- Proapoptotic Function of Integrin 3 in Human Hepatocellular Carcinoma Cells
- (2008) Y. Wu et al. CLINICAL CANCER RESEARCH
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