Comprehensive multi-center assessment of small RNA-seq methods for quantitative miRNA profiling
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Title
Comprehensive multi-center assessment of small RNA-seq methods for quantitative miRNA profiling
Authors
Keywords
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Journal
NATURE BIOTECHNOLOGY
Volume -, Issue -, Pages -
Publisher
Springer Nature
Online
2018-07-16
DOI
10.1038/nbt.4183
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Note: Only part of the references are listed.- Systematic characterization of A-to-I RNA editing hotspots in microRNAs across human cancers
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- (2016) Monya Baker NATURE
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- (2016) Steven N. Goodman et al. Science Translational Medicine
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- (2016) Jane E. Freedman et al. Nature Communications
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- (2016) Tiezheng Yuan et al. Scientific Reports
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- (2015) Andy Chu et al. NUCLEIC ACIDS RESEARCH
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- (2015) J. P. Tosar et al. NUCLEIC ACIDS RESEARCH
- Small RNA deep sequencing discriminates subsets of extracellular vesicles released by melanoma cells – Evidence of unique microRNA cargos
- (2015) Taral R Lunavat et al. RNA Biology
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- (2015) Jeanette Baran-Gale et al. Frontiers in Genetics
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- (2015) Ryan T. Fuchs et al. PLoS One
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- (2014) J. H. Bahn et al. CLINICAL CHEMISTRY
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- (2014) NATURE BIOTECHNOLOGY
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- (2014) Yunke Song et al. PLoS One
- Cerebrospinal Fluid Extracellular Vesicles Undergo Age Dependent Declines and Contain Known and Novel Non-coding RNAs
- (2014) Ashlee Tietje et al. PLoS One
- Conserved microRNA editing in mammalian evolution, development and disease
- (2014) Maria Warnefors et al. GENOME BIOLOGY
- voom: precision weights unlock linear model analysis tools for RNA-seq read counts
- (2014) Charity W Law et al. GENOME BIOLOGY
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- (2013) Xiaoyi Huang et al. BMC GENOMICS
- Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories
- (2013) Peter A C 't Hoen et al. NATURE BIOTECHNOLOGY
- The Cancer Genome Atlas Pan-Cancer analysis project
- (2013) John N Weinstein et al. NATURE GENETICS
- Identification of extracellular miRNA in human cerebrospinal fluid by next-generation sequencing
- (2013) K. L. Burgos et al. RNA
- High-efficiency RNA cloning enables accurate quantification of miRNA expression by deep sequencing
- (2013) Zhaojie Zhang et al. GENOME BIOLOGY
- Removing technical variability in RNA-seq data using conditional quantile normalization
- (2012) K. D. Hansen et al. BIOSTATISTICS
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- (2012) Shayne A. Bellingham et al. NUCLEIC ACIDS RESEARCH
- Deep sequencing of RNA from immune cell-derived vesicles uncovers the selective incorporation of small non-coding RNA biotypes with potential regulatory functions
- (2012) Esther N. M. Nolte-’t Hoen et al. NUCLEIC ACIDS RESEARCH
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- (2012) Davis J. McCarthy et al. NUCLEIC ACIDS RESEARCH
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- (2011) Sebastien Viollet et al. BMC BIOTECHNOLOGY
- MicroRNAs in body fluids—the mix of hormones and biomarkers
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- (2011) Anitha D. Jayaprakash et al. NUCLEIC ACIDS RESEARCH
- The sequence read archive: explosive growth of sequencing data
- (2011) Y. Kodama et al. NUCLEIC ACIDS RESEARCH
- RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries
- (2011) M. Hafner et al. RNA
- Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
- (2010) James H Bullard et al. BMC BIOINFORMATICS
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- (2010) Joshua Z Levin et al. NATURE METHODS
- Biases in Illumina transcriptome sequencing caused by random hexamer priming
- (2010) Kasper D. Hansen et al. NUCLEIC ACIDS RESEARCH
- The Sequence Read Archive
- (2010) R. Leinonen et al. NUCLEIC ACIDS RESEARCH
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Limitations and possibilities of small RNA digital gene expression profiling
- (2009) Sam E V Linsen et al. NATURE METHODS
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
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