Integrative bulk and single‐cell transcriptome profiling analysis reveals IFI27 as a novel interferon‐stimulated gene in dengue

Temporally integrated single cell RNA sequencing analysis of PBMC from experimental and natural primary human DENV-1 infections

(2021) Adam T. Waickman et al.   PLoS Pathogens

Knowledge gaps in the epidemiology of severe dengue impede vaccine evaluation

(2021) Tyler M Sharp et al.   LANCET INFECTIOUS DISEASES

Blood transcriptional biomarkers of acute viral infection for detection of pre-symptomatic SARS-CoV-2 infection: a nested, case-control diagnostic accuracy study

(2021) Rishi K Gupta et al.   Lancet Microbe

Vaccination for Dengue Prevention

(2021) Laura E. Adams et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes

(2020) Mirjana Efremova et al.   Nature Protocols

TLR2 on blood monocytes senses dengue virus infection and its expression correlates with disease pathogenesis

(2020) José A. Aguilar-Briseño et al.   Nature Communications

The innate immune effector ISG12a promotes cancer immunity by suppressing the canonical Wnt/β-catenin signaling pathway

(2020) Rilin Deng et al.   Cellular & Molecular Immunology

Detection of Viral Infections by Innate Immunity

(2020) Michael Carty et al.   BIOCHEMICAL PHARMACOLOGY

All About the RNA: Interferon-Stimulated Genes That Interfere With Viral RNA Processes

(2020) Emily Yang et al.   Frontiers in Immunology

A protein-interaction network of interferon-stimulated genes extends the innate immune system landscape

(2019) Philipp Hubel et al.   NATURE IMMUNOLOGY

Dengue

(2019) Annelies Wilder-Smith et al.   LANCET

Interferon-Stimulated Genes: What Do They All Do?

(2019) John W. Schoggins   Annual Review of Virology

Interferon target-gene expression and epigenomic signatures in health and disease

(2019) Franck J. Barrat et al.   NATURE IMMUNOLOGY

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Antiviral interferon response at single-cell resolution

(2018) Soheil Rastgou Talemi et al.   IMMUNOLOGICAL REVIEWS

SVM-RFE: selection and visualization of the most relevant features through non-linear kernels

(2018) Hector Sanz et al.   BMC BIOINFORMATICS

Gene expression variability across cells and species shapes innate immunity

(2018) Tzachi Hagai et al.   NATURE

Dengue virus and the host innate immune response

(2018) Naoko Uno et al.   Emerging Microbes & Infections

A novel immune biomarkerIFI27discriminates between influenza and bacteria in patients with suspected respiratory infection

(2017) Benjamin M. Tang et al.   EUROPEAN RESPIRATORY JOURNAL

Dengue virus NS1 protein activates immune cells via TLR4 but not TLR2 or TLR6

(2017) Naphak Modhiran et al.   IMMUNOLOGY AND CELL BIOLOGY

Clinical and Laboratory Diagnosis of Dengue Virus Infection

(2017) David A. Muller et al.   JOURNAL OF INFECTIOUS DISEASES

Interferon-Stimulated Genes as Enhancers of Antiviral Innate Immune Signaling

(2017) Keaton M. Crosse et al.   Journal of Innate Immunity

ISG12a Restricts Hepatitis C Virus Infection through the Ubiquitination-Dependent Degradation Pathway

(2016) Binbin Xue et al.   JOURNAL OF VIROLOGY

Robust enumeration of cell subsets from tissue expression profiles

(2015) Aaron M Newman et al.   NATURE METHODS

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Dengue fever

(2015) Senanayake A M Kularatne   BMJ-British Medical Journal

Live Cell Analysis and Mathematical Modeling Identify Determinants of Attenuation of Dengue Virus 2’-O-Methylation Mutant

(2015) Bianca Schmid et al.   PLoS Pathogens

Dengue fever

(2015) Senanayake A M Kularatne   BMJ-British Medical Journal

Interferon-Stimulated Genes: A Complex Web of Host Defenses

(2014) William M. Schneider et al.   Annual Review of Immunology

Dengue Virus Infection Induces Expansion of a CD14+CD16+ Monocyte Population that Stimulates Plasmablast Differentiation

(2014) Marcin Kwissa et al.   Cell Host & Microbe

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

(2012) Jeffrey T. Leek et al.   BIOINFORMATICS

Temporal Dynamics of the Transcriptional Response to Dengue Virus Infection in Nicaraguan Children

(2012) Stephen J. Popper et al.   PLoS Neglected Tropical Diseases

Characterization of early host responses in adults with dengue disease

(2011) Thomas Tolfvenstam et al.   BMC INFECTIOUS DISEASES

Differential regulation of toll-like receptor-2, toll-like receptor-4, CD16 and human leucocyte antigen-DR on peripheral blood monocytes during mild and severe dengue fever

(2010) Elzinandes L. Azeredo et al.   IMMUNOLOGY