The microbiomes of two Singaporean corals show site-specific differentiation and variability that correlates with the seasonal monsoons

Anomalous collapses of Nares Strait ice arches leads to enhanced export of Arctic sea ice

(2021) G. W. K. Moore et al.   Nature Communications

Seasonal Changes in Microbial Communities Associated With the Jewel Anemone Corynactis viridis

(2021) Giorgia Palladino et al.   Frontiers in Marine Science

Barriers and corridors of gene flow in an urbanized tropical reef system

(2021) Lutfi Afiq‐Rosli et al.   Evolutionary Applications

Coral-associated nitrogen fixation rates and diazotrophic diversity on a nutrient-replete equatorial reef

(2021) Molly A. Moynihan et al.   ISME Journal

Dissolved organic matter from tropical peatlands reduces shelf sea light availability in the Singapore Strait, Southeast Asia

(2021) P Martin et al.   MARINE ECOLOGY PROGRESS SERIES

Differential Response of the Microbiome of Pocillopora acuta to Reciprocal Transplantation Within Singapore

(2021) Lindsey K. Deignan et al.   MICROBIAL ECOLOGY

Coral microbiome manipulation elicits metabolic and genetic restructuring to mitigate heat stress and evade mortality

(2021) Erika P. Santoro et al.   Science Advances

Spatio-temporal dynamics of coral–macroalgal interactions and their impacts on coral growth on urbanised reefs

(2021) Jenny Fong et al.   MARINE POLLUTION BULLETIN

Seasonal fluctuations in symbiotic bacteria and their role in environmental adaptation of the scleractinian coral Acropora pruinosa in high-latitude coral reef area of the South China Sea

(2021) Xiaopeng Yu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Responses of urban reef corals during the 2016 mass bleaching event

(2020) Chin Soon Lionel Ng et al.   MARINE POLLUTION BULLETIN

Adapting with Microbial Help: Microbiome Flexibility Facilitates Rapid Responses to Environmental Change

(2020) Christian R. Voolstra et al.   BIOESSAYS

Microbial community and transcriptional responses to increased temperatures in coral Pocillopora damicornis holobiont

(2020) Jie Li et al.   ENVIRONMENTAL MICROBIOLOGY

Increased diversity and concordant shifts in community structure of coral‐associated Symbiodiniaceae and bacteria subjected to chronic human disturbance

(2020) Danielle C. Claar et al.   MOLECULAR ECOLOGY

Patterns of environmental variability influence coral‐associated bacterial and algal communities on the Mesoamerican Barrier Reef

(2020) Lauren Speare et al.   MOLECULAR ECOLOGY

Microbiome dynamics in the tissue and mucus of acroporid corals differ in relation to host and environmental parameters

(2020) Giulia M. Marchioro et al.   PeerJ

Coral Microbiomes Demonstrate Flexibility and Resilience Through a Reduction in Community Diversity Following a Thermal Stress Event

(2020) Rebecca L. Maher et al.   Frontiers in Ecology and Evolution

Coral Probiotics: Premise, Promise, Prospects

(2020) Raquel S. Peixoto et al.   Annual Review of Animal Biosciences

Disentangling the effect of host-genotype and environment on the microbiome of the coral Acropora tenuis

(2019) Bettina Glasl et al.   PeerJ

Microbiome engineering: enhancing climate resilience in corals

(2019) Hannah E Epstein et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Relative stability of the Pocillopora acuta microbiome throughout a thermal stress event

(2019) Hannah E. Epstein et al.   CORAL REEFS

Multi-colony coral skeletal Ba/Ca from Singapore’s turbid urban reefs: Relationship with contemporaneous in-situ seawater parameters

(2019) J.T.I. Tanzil et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Light limitation selects for depth generalists in urbanised reef coral communities

(2019) Gwendolyn S.E. Chow et al.   MARINE ENVIRONMENTAL RESEARCH

Characterisation of coral-associated bacterial communities in an urbanised marine environment shows strong divergence over small geographic scales

(2019) Benjamin J. Wainwright et al.   CORAL REEFS

Coral bacterial community structure responds to environmental change in a host-specific manner

(2019) Maren Ziegler et al.   Nature Communications

Structure and stability of the coral microbiome in space and time

(2019) Courtney M. Dunphy et al.   Scientific Reports

Microbial indicators of environmental perturbations in coral reef ecosystems

(2019) Bettina Glasl et al.   Microbiome

Temporal Variation in the Microbiome of Acropora Coral Species Does Not Reflect Seasonality

(2019) Hannah E. Epstein et al.   Frontiers in Microbiology

Temporal and spatial dynamics of Bacteria, Archaea and protists in equatorial coastal waters

(2019) Caroline Chénard et al.   Scientific Reports

Microbial conservation in the Anthropocene

(2018) Nicole S. Webster et al.   ENVIRONMENTAL MICROBIOLOGY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Coral physiology and microbiome dynamics under combined warming and ocean acidification

(2018) Andréa G. Grottoli et al.   PLoS One

Coral Bacterial-Core Abundance and Network Complexity as Proxies for Anthropogenic Pollution

(2018) Deborah C. A. Leite et al.   Frontiers in Microbiology

Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation

(2018) Phillipe M. Rosado et al.   ISME Journal

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

(2018) F. Joseph Pollock et al.   Nature Communications

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

(2018) Nicole M. Davis et al.   Microbiome

Shifting paradigms in restoration of the world's coral reefs

(2017) Madeleine J. H. van Oppen et al.   GLOBAL CHANGE BIOLOGY

Seasonal Stability in the Microbiomes of Temperate Gorgonians and the Red Coral Corallium rubrum Across the Mediterranean Sea

(2017) Jeroen A. J. M. van de Water et al.   MICROBIAL ECOLOGY

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

(2017) Julio Rozas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bacterial community dynamics are linked to patterns of coral heat tolerance

(2017) Maren Ziegler et al.   Nature Communications

Stable mucus-associated bacterial communities in bleached and healthy corals of Porites lobata from the Arabian Seas

(2017) Ghaida Hadaidi et al.   Scientific Reports

Resilience of the prokaryotic microbial community of Acropora digitifera to elevated temperature

(2017) Andrian P. Gajigan et al.   MicrobiologyOpen

Season, but not symbiont state, drives microbiome structure in the temperate coral Astrangia poculata

(2017) Koty H. Sharp et al.   Microbiome

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Insights into the Coral Microbiome: Underpinning the Health and Resilience of Reef Ecosystems

(2016) David G. Bourne et al.   Annual Review of Microbiology

The microbiome of coral surface mucus has a key role in mediating holobiont health and survival upon disturbance

(2016) Bettina Glasl et al.   ISME Journal

Coral microbial community dynamics in response to anthropogenic impacts near a major city in the central Red Sea

(2016) Maren Ziegler et al.   MARINE POLLUTION BULLETIN

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Beyond the Coral Triangle: high genetic diversity and near panmixia in Singapore's populations of the broadcast spawning sea starProtoreaster nodosus

(2016) Y. C. Tay et al.   Royal Society Open Science

27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore

(2016) J. R. Guest et al.   Scientific Reports

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Microbiome structure of the fungid coralCtenactis echinataaligns with environmental differences

(2015) Cornelia Roder et al.   MOLECULAR ECOLOGY

Coral-the world's most diverse symbiotic ecosystem

(2015) Linda L. Blackall et al.   MOLECULAR ECOLOGY

Coral Settlement on a Highly Disturbed Equatorial Reef System

(2015) Andrew G. Bauman et al.   PLoS One

Genetic connectivity of the broadcast spawning reef coral Platygyra sinensis on impacted reefs, and the description of new microsatellite markers

(2014) Y. C. Tay et al.   CORAL REEFS

Rearing juvenile ‘corals of opportunity’ inin situnurseries – A reef rehabilitation approach for sediment-impacted environments

(2014) Chin Soon Lionel Ng et al.   Marine Biology Research

Photo-physiological costs associated with acute sediment stress events in three near-shore turbid water corals

(2014) NK Browne et al.   MARINE ECOLOGY PROGRESS SERIES

Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors

(2014) L. W. Kelly et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial dynamics within the mucus, tissue and skeleton of the coral Porites lutea during different seasons

(2014) Jie Li et al.   Scientific Reports

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Evaluating life-history strategies of reef corals from species traits

(2012) Emily S. Darling et al.   ECOLOGY LETTERS

Cleaning up the 'Bigmessidae': Molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae

(2011) Danwei Huang et al.   BMC EVOLUTIONARY BIOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systematic and Biogeographical Patterns in the Reproductive Biology of Scleractinian Corals

(2009) Andrew H. Baird et al.   Annual Review of Ecology Evolution and Systematics

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Coral mucus-associated bacteria: a possible first line of defense

(2009) Maya Shnit-Orland et al.   FEMS MICROBIOLOGY ECOLOGY

More evidence for pervasive paraphyly in scleractinian corals: Systematic study of Southeast Asian Faviidae (Cnidaria; Scleractinia) based on molecular and morphological data

(2008) Danwei Huang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION