Characterisation of coral-associated bacterial communities in an urbanised marine environment shows strong divergence over small geographic scales

Last species standing: loss of Pocilloporidae corals associated with coastal urbanization in a tropical city state

(2019) Rosa Celia Poquita-Du et al.   Marine Biodiversity

Multi-colony coral skeletal Ba/Ca from Singapore’s turbid urban reefs: Relationship with contemporaneous in-situ seawater parameters

(2019) J.T.I. Tanzil et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Light limitation selects for depth generalists in urbanised reef coral communities

(2019) Gwendolyn S.E. Chow et al.   MARINE ENVIRONMENTAL RESEARCH

Seagrass-associated fungal communities follow Wallace's line, but host genotype does not structure fungal community

(2018) Benjamin J. Wainwright et al.   JOURNAL OF BIOGEOGRAPHY

Urban coral reefs: Degradation and resilience of hard coral assemblages in coastal cities of East and Southeast Asia

(2018) Eliza C. Heery et al.   MARINE POLLUTION BULLETIN

Microbiomes of gall-inducing copepod crustaceans from the corals Stylophora pistillata (Scleractinia) and Gorgonia ventalina (Alcyonacea)

(2018) Pavel V. Shelyakin et al.   Scientific Reports

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

(2018) F. Joseph Pollock et al.   Nature Communications

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

(2018) Nicole M. Davis et al.   Microbiome

Dispersal alters bacterial diversity and composition in a natural community

(2017) Michaeline B N Albright et al.   ISME Journal

A metabarcoding comparison of windward and leeward airborne algal diversity across the Ko‘olau mountain range on the island of O'ahu, Hawai‘i1

(2017) Alison R. Sherwood et al.   JOURNAL OF PHYCOLOGY

Bacterial community dynamics are linked to patterns of coral heat tolerance

(2017) Maren Ziegler et al.   Nature Communications

Beneficial Microorganisms for Corals (BMC): Proposed Mechanisms for Coral Health and Resilience

(2017) Raquel S. Peixoto et al.   Frontiers in Microbiology

Spatial variability of fish communities in a highly urbanised reef system

(2017) Daisuke Taira et al.   URBAN ECOSYSTEMS

Foliar microbiome transplants confer disease resistance in a critically-endangered plant

(2017) Geoffrey Zahn et al.   PeerJ

Fungi associated with mesophotic macroalgae from the ‘Au‘au Channel, west Maui are differentiated by host and overlap terrestrial communities

(2017) Benjamin J. Wainwright et al.   PeerJ

High resolution profiling of coral-associated bacterial communities using full-length 16S rRNA sequence data from PacBio SMRT sequencing system

(2017) Wirulda Pootakham et al.   Scientific Reports

Coral microbial community dynamics in response to anthropogenic impacts near a major city in the central Red Sea

(2016) Maren Ziegler et al.   MARINE POLLUTION BULLETIN

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

A Multimethod Approach towards Assessing Urban Flood Patterns and Its Associated Vulnerabilities in Singapore

(2016) Winston T. L. Chow et al.   Advances in Meteorology

The urban marine environment of Singapore

(2016) Tsai Min Sin et al.   Regional Studies in Marine Science

27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore

(2016) J. R. Guest et al.   Scientific Reports

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

(2015) Tracy D Ainsworth et al.   ISME Journal

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Rebuilding coral reefs: does active reef restoration lead to sustainable reefs?

(2013) Baruch Rinkevich   Current Opinion in Environmental Sustainability

Bacterial Associates of Two Caribbean Coral Species Reveal Species-Specific Distribution and Geographic Variability

(2012) Kathleen M. Morrow et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Spatial heterogeneity of bacterial communities in the mucus of Montastraea annularis

(2011) CA Daniels et al.   MARINE ECOLOGY PROGRESS SERIES

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Bacterial Community Associated with Healthy and Diseased Reef Coral Mussismilia hispida from Eastern Brazil

(2010) Alinne Pereira de Castro et al.   MICROBIAL ECOLOGY

Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing

(2010) HÉLÈNE AGOGUÉ et al.   MOLECULAR ECOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA