Increased diversity and concordant shifts in community structure of coral‐associated Symbiodiniaceae and bacteria subjected to chronic human disturbance

Revealing changes in the microbiome of Symbiodiniaceae under thermal stress

(2020) Emma F. Camp et al.   ENVIRONMENTAL MICROBIOLOGY

Symbiont community diversity is more variable in corals that respond poorly to stress

(2020) Lauren I. Howe‐Kerr et al.   GLOBAL CHANGE BIOLOGY

SymPortal: a novel analytical framework and platform for coral algal symbiont next-generation sequencing ITS2 profiling

(2019) B. C. C. Hume et al.   Molecular Ecology Resources

Variable interaction outcomes of local disturbance and El Niño-induced heat stress on coral microbiome alpha and beta diversity

(2019) Jamie M. McDevitt-Irwin et al.   CORAL REEFS

Species co-occurrence networks: Can they reveal trophic and non-trophic interactions in ecological communities?

(2018) Mara A. Freilich et al.   ECOLOGY

Climate change promotes parasitism in a coral symbiosis

(2018) David M. Baker et al.   ISME Journal

Adaptation to reef habitats through selection on the coral animal and its associated microbiome

(2018) Madeleine J. H. van Oppen et al.   MOLECULAR ECOLOGY

Global patterns and impacts of El Niño events on coral reefs: A meta-analysis

(2018) Danielle C. Claar et al.   PLoS One

Spatial and temporal patterns of mass bleaching of corals in the Anthropocene

(2018) Terry P. Hughes et al.   SCIENCE

Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts

(2018) Todd C. LaJeunesse et al.   CURRENT BIOLOGY

Comparison of microbiomes of cold-water corals Primnoa pacifica and Primnoa resedaeformis, with possible link between microbiome composition and host genotype

(2018) Dawn B. Goldsmith et al.   Scientific Reports

Exploring mechanisms that affect coral cooperation: symbiont transmission mode, cell density and community composition

(2018) Carly D. Kenkel et al.   PeerJ

Thermal refugia against coral bleaching throughout the northern Red Sea

(2017) Eslam O. Osman et al.   GLOBAL CHANGE BIOLOGY

Host specificity of Symbiodinium variants revealed by an ITS2 metahaplotype approach

(2017) Edward G Smith et al.   ISME Journal

Correspondence of coral holobiont metabolome with symbiotic bacteria, archaea and Symbiodinium communities

(2017) Emilia M. Sogin et al.   Environmental Microbiology Reports

Beneficial Microorganisms for Corals (BMC): Proposed Mechanisms for Coral Health and Resilience

(2017) Raquel S. Peixoto et al.   Frontiers in Microbiology

Using high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, US Virgin Islands

(2017) Ross Cunning et al.   PeerJ

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

(2017) Amnon Amir et al.   mSystems

Insights into the Coral Microbiome: Underpinning the Health and Resilience of Reef Ecosystems

(2016) David G. Bourne et al.   Annual Review of Microbiology

Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas

(2016) Matthew J. Neave et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Least-Squares Means: TheRPackagelsmeans

(2016) Russell V. Lenth   Journal of Statistical Software

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Subsistence in isolation: Fishing dependence and perceptions of change on Kiritimati, the world's largest atoll

(2016) Maryann S. Watson et al.   OCEAN & COASTAL MANAGEMENT

Climate change disables coral bleaching protection on the Great Barrier Reef

(2016) T. D. Ainsworth et al.   SCIENCE

Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales

(2016) Jesse R. Zaneveld et al.   Nature Communications

Distinguishing between Microbial Habitats Unravels Ecological Complexity in Coral Microbiomes

(2016) Amy Apprill et al.   mSystems

Warming Trends and Bleaching Stress of the World’s Coral Reefs 1985–2012

(2016) Scott F. Heron et al.   Scientific Reports

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

(2015) Tracy D Ainsworth et al.   ISME Journal

Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix

(2015) Olga Pantos et al.   ISME Journal

Investigating the causes and consequences of symbiont shuffling in a multi-partner reef coral symbiosis under environmental change

(2015) R. Cunning et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Nitrogen cycling in corals: the key to understanding holobiont functioning?

(2015) Nils Rädecker et al.   TRENDS IN MICROBIOLOGY

Symbiosomes: temporary moonlighting organelles

(2014) David W. Emerich et al.   BIOCHEMICAL JOURNAL

Microbial aggregates within tissues infect a diversity of corals throughout the Indo-Pacific

(2014) TM Work et al.   MARINE ECOLOGY PROGRESS SERIES

Much beyond Mantel: Bringing Procrustes Association Metric to the Plant and Soil Ecologist’s Toolbox

(2014) Francy Junio Gonçalves Lisboa et al.   PLoS One

Comparing Bacterial Community Composition of Healthy and Dark Spot-Affected Siderastrea siderea in Florida and the Caribbean

(2014) Christina A. Kellogg et al.   PLoS One

Choosing and using diversity indices: insights for ecological applications from the German Biodiversity Exploratories

(2014) E. Kathryn Morris et al.   Ecology and Evolution

Chronic nutrient enrichment increases prevalence and severity of coral disease and bleaching

(2013) Rebecca L. Vega Thurber et al.   GLOBAL CHANGE BIOLOGY

A bacterial pathogen uses dimethylsulfoniopropionate as a cue to target heat-stressed corals

(2013) Melissa Garren et al.   ISME Journal

Bacterial profiling of White Plague Disease in a comparative coral species framework

(2013) Cornelia Roder et al.   ISME Journal

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Coral-associated micro-organisms and their roles in promoting coral health and thwarting diseases

(2013) C. J. Krediet et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Nutrient cycling in early coral life stages:Pocillopora damicornislarvae provide their algal symbiont (Symbiodinium) with nitrogen acquired from bacterial associates

(2013) Janja Ceh et al.   Ecology and Evolution

Characterization of Geographically Distinct Bacterial Communities Associated with Coral Mucus Produced by Acropora spp. and Porites spp.

(2012) B. A. McKew et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evaluating life-history strategies of reef corals from species traits

(2012) Emily S. Darling et al.   ECOLOGY LETTERS

A single-cell view of ammonium assimilation in coral–dinoflagellate symbiosis

(2012) Mathieu Pernice et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Macroalgae Decrease Growth and Alter Microbial Community Structure of the Reef-Building Coral, Porites astreoides

(2012) Rebecca Vega Thurber et al.   PLoS One

Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals

(2012) H. M. Putnam et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Excess algal symbionts increase the susceptibility of reef corals to bleaching

(2012) Ross Cunning et al.   Nature Climate Change

Nutrient enrichment can increase the susceptibility of reef corals to bleaching

(2012) Jörg Wiedenmann et al.   Nature Climate Change

Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease

(2011) Anny Cárdenas et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Metagenomic analysis of the coral holobiont during a natural bleaching event on the Great Barrier Reef

(2011) Raechel Littman et al.   Environmental Microbiology Reports

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

The dynamics of microbial partnerships in the coral Isopora palifera

(2010) Chung-Pin Chen et al.   ISME Journal

Responses of coral-associated bacterial communities to heat stress differ withSymbiodiniumtype on the same coral host

(2010) RAECHEL A. LITTMAN et al.   MOLECULAR ECOLOGY

A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i

(2010) Xavier Pochon et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stability of coral–endosymbiont associations during and after a thermal stress event in the southern Great Barrier Reef

(2009) M. Stat et al.   CORAL REEFS

Metagenomic analysis of stressed coral holobionts

(2009) Rebecca Vega Thurber et al.   ENVIRONMENTAL MICROBIOLOGY

Diazotrophic bacteria associated with Hawaiian Montipora corals: Diversity and abundance in correlation with symbiotic dinoflagellates

(2009) N.D. Olson et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Bacterial communities of juvenile corals infected with different Symbiodinium (dinoflagellate) clades

(2009) RA Littman et al.   MARINE ECOLOGY PROGRESS SERIES

Specificity in communities of Symbiodinium in corals from Johnston Atoll

(2009) M Stat et al.   MARINE ECOLOGY PROGRESS SERIES

Hyperspectral and Physiological Analyses of Coral-Algal Interactions

(2009) Katie Barott et al.   PLoS One

Imaging intracellular pH in a reef coral and symbiotic anemone

(2009) A. A. Venn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The future of coral reefs: a microbial perspective

(2009) Tracy D. Ainsworth et al.   TRENDS IN ECOLOGY & EVOLUTION

Bacterial communities closely associated with coral tissues vary under experimental and natural reef conditions and thermal stress

(2008) TD Ainsworth et al.   Aquatic Biology

Metabolic interactions between algal symbionts and invertebrate hosts

(2008) DAVID YELLOWLEES et al.   PLANT CELL AND ENVIRONMENT