Coral Microbiomes Demonstrate Flexibility and Resilience Through a Reduction in Community Diversity Following a Thermal Stress Event

Comparative genomics: Dominant coral-bacterium Endozoicomonas acroporae metabolizes dimethylsulfoniopropionate (DMSP)

(2020) Kshitij Tandon et al.   ISME Journal

Nutrient starvation impairs the trophic plasticity of reef-building corals under ocean warming

(2019) Leïla Ezzat et al.   FUNCTIONAL ECOLOGY

A global analysis of coral bleaching over the past two decades

(2019) S. Sully et al.   Nature Communications

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Coral microbiome dynamics, functions and design in a changing world

(2019) Madeleine J. H. van Oppen et al.   NATURE REVIEWS MICROBIOLOGY

Coral bacterial community structure responds to environmental change in a host-specific manner

(2019) Maren Ziegler et al.   Nature Communications

Multiple stressors interact primarily through antagonism to drive changes in the coral microbiome

(2019) Rebecca L. Maher et al.   Scientific Reports

Nitrogen Identity Drives Differential Impacts of Nutrients on Coral Bleaching and Mortality

(2019) Deron E. Burkepile et al.   ECOSYSTEMS

Surgeonfish feces increase microbial opportunism in reef-building corals

(2019) L Ezzat et al.   MARINE ECOLOGY PROGRESS SERIES

Different nitrogen sources speed recovery from corallivory and uniquely alter the microbiome of a reef-building coral

(2019) Mallory M. Rice et al.   PeerJ

Coral physiology and microbiome dynamics under combined warming and ocean acidification

(2018) Andréa G. Grottoli et al.   PLoS One

Spatial and temporal patterns of mass bleaching of corals in the Anthropocene

(2018) Terry P. Hughes et al.   SCIENCE

Exploring coral microbiome assemblages in the South China Sea

(2018) Lin Cai et al.   Scientific Reports

Recruitment Drives Spatial Variation in Recovery Rates of Resilient Coral Reefs

(2018) Sally J. Holbrook et al.   Scientific Reports

Dominance of Endozoicomonas bacteria throughout coral bleaching and mortality suggests structural inflexibility of the Pocillopora verrucosa microbiome

(2018) Claudia Pogoreutz et al.   Ecology and Evolution

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

(2018) F. Joseph Pollock et al.   Nature Communications

Animal pee in the sea: consumer-mediated nutrient dynamics in the world's changing oceans

(2017) Jacob E. Allgeier et al.   GLOBAL CHANGE BIOLOGY

Bacterial community dynamics are linked to patterns of coral heat tolerance

(2017) Maren Ziegler et al.   Nature Communications

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

(2017) Amnon Amir et al.   mSystems

Intraspecific differences in molecular stress responses and coral pathobiome contribute to mortality under bacterial challenge in Acropora millepora

(2017) Rachel M. Wright et al.   Scientific Reports

Insights into the Coral Microbiome: Underpinning the Health and Resilience of Reef Ecosystems

(2016) David G. Bourne et al.   Annual Review of Microbiology

Long-term salinity tolerance is accompanied by major restructuring of the coral bacterial microbiome

(2016) Till Röthig et al.   MOLECULAR ECOLOGY

Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales

(2016) Jesse R. Zaneveld et al.   Nature Communications

Epimicrobiota Associated with the Decay and Recovery of Orbicella Corals Exhibiting Dark Spot Syndrome

(2016) Julie L. Meyer et al.   Frontiers in Microbiology

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Distinguishing between Microbial Habitats Unravels Ecological Complexity in Coral Microbiomes

(2016) Amy Apprill et al.   mSystems

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

New insights into carbon acquisition and exchanges within the coral–dinoflagellate symbiosis under NH4+and NO3−supply

(2015) Leïla Ezzat et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Context-dependent effects of nutrient loading on the coral–algal mutualism

(2014) Andrew A. Shantz et al.   ECOLOGY

Effects of environmental factors on dimethylated sulfur compounds and their potential role in the antioxidant system of the coral holobiont

(2014) E. S. M. Deschaseaux et al.   LIMNOLOGY AND OCEANOGRAPHY

How will coral reef fish communities respond to climate-driven disturbances? Insight from landscape-scale perturbations

(2014) Thomas C. Adam et al.   OECOLOGIA

Impacts of nutrient enrichment on coral reefs: new perspectives and implications for coastal management and reef survival

(2014) Cecilia D’Angelo et al.   Current Opinion in Environmental Sustainability

PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?

(2013) Marti J. Anderson et al.   ECOLOGICAL MONOGRAPHS

Chronic nutrient enrichment increases prevalence and severity of coral disease and bleaching

(2013) Rebecca L. Vega Thurber et al.   GLOBAL CHANGE BIOLOGY

A bacterial pathogen uses dimethylsulfoniopropionate as a cue to target heat-stressed corals

(2013) Melissa Garren et al.   ISME Journal

The response of the scleractinian coral Turbinaria reniformis to thermal stress depends on the nitrogen status of the coral holobiont

(2013) E. Beraud et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Characterisation of the Bacterial and Fungal Communities Associated with Different Lesion Sizes of Dark Spot Syndrome Occurring in the Coral Stephanocoenia intersepta

(2013) Michael Sweet et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Changes in Bleaching Susceptibility among Corals Subject to Ocean Warming and Recurrent Bleaching in Moorea, French Polynesia

(2013) Morgan S. Pratchett et al.   PLoS One

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Excess algal symbionts increase the susceptibility of reef corals to bleaching

(2012) Ross Cunning et al.   Nature Climate Change

Nutrient enrichment can increase the susceptibility of reef corals to bleaching

(2012) Jörg Wiedenmann et al.   Nature Climate Change

Herbivory, Connectivity, and Ecosystem Resilience: Response of a Coral Reef to a Large-Scale Perturbation

(2011) Thomas C. Adam et al.   PLoS One

Coral-Associated Bacterial Assemblages: Current Knowledge and the Potential for Climate-Driven Impacts

(2010) Morgan E. Mouchka et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Recurrent disturbances, recovery trajectories, and resilience of coral assemblages on a South Central Pacific reef

(2009) M. Adjeroud et al.   CORAL REEFS

Metagenomic analysis of stressed coral holobionts

(2009) Rebecca Vega Thurber et al.   ENVIRONMENTAL MICROBIOLOGY

The Genome of the Amoeba Symbiont "Candidatus Amoebophilus asiaticus" Reveals Common Mechanisms for Host Cell Interaction among Amoeba-Associated Bacteria

(2009) S. Schmitz-Esser et al.   JOURNAL OF BACTERIOLOGY

Water quality and coral bleaching thresholds: Formalising the linkage for the inshore reefs of the Great Barrier Reef, Australia

(2009) Scott A. Wooldridge   MARINE POLLUTION BULLETIN

Phase-shift in coral reef communities in the Florida Keys National Marine Sanctuary (FKNMS), USA

(2008) Ronald J. Maliao et al.   MARINE BIOLOGY