Functional Fermented Milk with Fruit Pulp Modulates the In Vitro Intestinal Microbiota

Genetic tools for the redirection of the central carbon flow towards the production of lactate in the human gut bacterium Phocaeicola (Bacteroides) vulgatus

(2022) Rebecca Lück et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Yoghurt consumption is associated with changes in the composition of the human gut microbiome and metabolome

(2022) Caroline Ivanne Le Roy et al.   BMC MICROBIOLOGY

Lactobacillus paracasei from Koumiss Ameliorates Diarrhea in mice via Tight Junctions Modulation

(2022) Shunan Ren et al.   NUTRITION

Alterations and Prediction of Functional Profiles of Gut Microbiota After Fecal Microbiota Transplantation for Iranian Recurrent Clostridioides difficile Infection with Underlying Inflammatory Bowel Disease: A Pilot Study

(2022) Masoumeh Azimirad et al.   Journal of Inflammation Research

Misidentification of Phocaeicola (Bacteroides) dorei in two patients with bacteremia

(2022) Fernando Cobo et al.   ANAEROBE

Microbiota medicine: towards clinical revolution

(2022) Prisca Gebrayel et al.   Journal of Translational Medicine

Probiotics-loaded nanoparticles attenuated colon inflammation, oxidative stress, and apoptosis in colitis

(2022) Abdullah. Glil Alkushi et al.   Scientific Reports

Characterizing the mucin-degrading capacity of the human gut microbiota

(2022) Janiece S. Glover et al.   Scientific Reports

Inter-species Metabolic Interactions in an In-vitro Minimal Human Gut Microbiome of Core Bacteria

(2022) Sudarshan A. Shetty et al.   npj Biofilms and Microbiomes

Polyphenols and Polysaccharides from Morus alba L. Fruit Attenuate High-Fat Diet-Induced Metabolic Syndrome Modifying the Gut Microbiota and Metabolite Profile

(2022) Meixia Wan et al.   Foods

Fruit bioactive compounds: Effect on lactic acid bacteria and on intestinal microbiota

(2022) Tais Fernanda Borgonovi et al.   FOOD RESEARCH INTERNATIONAL

Influence of free and immobilized chitosan on a defined human gut microbial ecosystem

(2022) María Ruiz-Rico et al.   FOOD RESEARCH INTERNATIONAL

In vitro digestion and fecal fermentation behaviors of polysaccharides from Ziziphus Jujuba cv. Pozao and its interaction with human gut microbiota

(2022) Xue Han et al.   FOOD RESEARCH INTERNATIONAL

Characterization and in vitro simulated gastrointestinal digestion and fermentation of Mentha haplocalyx polysaccharide

(2022) Chuchu Fang et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Determination of Microbial Diversity and Community Composition in Unfermented and Fermented Washing Rice Water by High-Throughput Sequencing

(2021) Youlin Chen et al.   CURRENT MICROBIOLOGY

PROBIOTIC INFANT CEREAL IMPROVES CHILDREŃS GUT MICROBIOTA: INSIGHTS USING THE SIMULATOR OF HUMAN INTESTINAL MICROBIAL ECOSYSTEM (SHIME®)

(2021) Mateus Kawata Salgaço et al.   FOOD RESEARCH INTERNATIONAL

A Comparison of the In Vitro Effects of 2’Fucosyllactose and Lactose on the Composition and Activity of Gut Microbiota from Infants and Toddlers

(2021) Pieter Van den Abbeele et al.   Nutrients

Lacticaseibacillus casei SJRP38 and buriti pulp increased bioactive compounds and probiotic potential of fermented milk

(2021) Tais Fernanda Borgonovi et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Mediterraneibacter catenae SW178 sp. nov., an intestinal bacterium of feral chicken

(2021) Supapit Wongkuna et al.   PeerJ

Phocaeicola faecalis sp. nov., a strictly anaerobic bacterial strain adapted to the human gut ecosystem

(2021) Chen Wang et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Polyphenols as modulators of pre‐established gut microbiota dysbiosis: State‐of‐the‐art

(2021) Romina Molinari et al.   BIOFACTORS

Markers of metabolic health and gut microbiome diversity: findings from two population-based cohort studies

(2021) Semi Zouiouich et al.   DIABETOLOGIA

Revisiting the steps of Salmonella gut infection with a focus on antagonistic interbacterial interactions

(2021) Stephanie Sibinelli‐Sousa et al.   FEBS Journal

Gut dysbiosis, defective autophagy and altered immune responses in neurodegenerative diseases: Tales of a vicious cycle

(2021) Saravana Babu Chidambaram et al.   PHARMACOLOGY & THERAPEUTICS

Health benefits and technological effects of Lacticaseibacillus casei-01: An overview of the scientific literature

(2021) Tatiana Colombo Pimentel et al.   TRENDS IN FOOD SCIENCE & TECHNOLOGY

Health-Promoting Properties of Lactobacilli in Fermented Dairy Products

(2021) Yantyati Widyastuti et al.   Frontiers in Microbiology

Review: microbial transformations of human bile acids

(2021) Douglas V. Guzior et al.   Microbiome

Gut Microbiota and Host Metabolism: From Proof of Concept to Therapeutic Intervention

(2021) Patrice D. Cani et al.   Microorganisms

Spirulina platensis biomass enhances the proliferation rate of Lactobacillus acidophilus 5 (La-5) and combined with La-5 impact the gut microbiota of medium-age healthy individuals through an in vitro gut microbiome model

(2021) Viviane Priscila Barros de Medeiros et al.   FOOD RESEARCH INTERNATIONAL

Black raspberry extract shifted gut microbe diversity and their metabolic landscape in a human colonic model

(2021) Shiqi Zhang et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

L-citrulline enriched fermented milk with Lactobacillus helveticus attenuates dextran sulfate sodium (DSS) induced colitis in mice

(2021) Sze Wing Ho et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Modulation of human gut microbiota composition and metabolites by arabinogalactan and Bifidobacterium longum subsp. longum BB536 in the Simulator of the Human Intestinal Microbial Ecosystem (SHIME®)

(2021) Yan Wang et al.   Journal of Functional Foods

Functional importance of bioactive compounds of foods with Potential Health Benefits: A review on recent trends

(2021) Kolawole Banwo et al.   Food Bioscience

Effect of processing on the bioaccessibility of essential minerals in goat and cow milk and dairy products assessed by different static in vitro digestion models

(2021) José Luan da Paixão Teixeira et al.   FOOD CHEMISTRY

Modulation of the intestinal microbiota and the metabolites produced by the administration of ice cream and a dietary supplement containing the same probiotics

(2020) Vivian Cristina da Cruz Rodrigues et al.   BRITISH JOURNAL OF NUTRITION

Effect of polyphenol from apple peel extract on the survival of probiotics in yoghurt ice cream

(2020) Ishtiaque Ahmad et al.   INTERNATIONAL JOURNAL OF FOOD SCIENCE AND TECHNOLOGY

Effects of a symbiotic yogurt using monk fruit extract as sweetener on glucose regulation and gut microbiota in rats with type 2 diabetes mellitus

(2020) Qingfeng Ban et al.   JOURNAL OF DAIRY SCIENCE

Fermented blueberry pomace with antioxidant properties improves fecal microbiota community structure and short chain fatty acids production in an in vitro mode

(2020) Yuxin Cheng et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota

(2020) Christian Diener et al.   mSystems

A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae

(2020) Jinshui Zheng et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The Genus Alistipes: Gut Bacteria With Emerging Implications to Inflammation, Cancer, and Mental Health

(2020) Bianca J. Parker et al.   Frontiers in Immunology

Mutual influence of polyphenols and Lactobacillus spp. bacteria in food: a review

(2020) Lidia Piekarska-Radzik et al.   EUROPEAN FOOD RESEARCH AND TECHNOLOGY

Probiotic low-fat fermented goat milk with passion fruit by-product: In vitro effect on obese individuals’ microbiota and on metabolites production

(2020) Sabrina Neves Casarotti et al.   FOOD RESEARCH INTERNATIONAL

Exposure to the environmental pollutant ammonia causes changes in gut microbiota and inflammatory markers in fattening pigs

(2020) Yutao Li et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Fruits and fruit by-products as sources of bioactive compounds. Benefits and trends of lactic acid fermentation in the development of novel fruit-based functional beverages

(2020) Luciana Gabriela Ruiz Rodríguez et al.   FOOD RESEARCH INTERNATIONAL

Bioactivity of dietary polyphenols: The role of metabolites

(2019) Simon Vlad Luca et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

The Effects of Unfermented and Fermented Cow and Sheep Milk on the Gut Microbiota

(2019) Elizabeth A. Rettedal et al.   Frontiers in Microbiology

Degradation of fibres from fruit by-products allows selective modulation of the gut bacteria in an in vitro model of the proximal colon

(2019) Carlota Bussolo de Souza et al.   Journal of Functional Foods

Bioactive compounds from date fruit and seed as potential nutraceutical and functional food ingredients

(2019) Sajid Maqsood et al.   FOOD CHEMISTRY

Short-term feeding of probiotics and synbiotics modulates caecal microbiota during Salmonella Typhimurium infection but does not reduce shedding and invasion in chickens

(2019) Samiullah Khan et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Application of the Dynamic Gastrointestinal Simulator (simgi®) to assess the impact of probiotic supplementation in the metabolism of grape polyphenols

(2019) Irene Gil-Sánchez et al.   FOOD RESEARCH INTERNATIONAL

Fecal microbiome and metabolome of infants fed bovine MFGM supplemented formula or standard formula with breast-fed infants as reference: a randomized controlled trial

(2019) Xuan He et al.   Scientific Reports

Microcins in Enterobacteriaceae: Peptide Antimicrobials in the Eco-Active Intestinal Chemosphere

(2019) Fernando Baquero et al.   Frontiers in Microbiology

OUP accepted manuscript

(2018)   BIOINFORMATICS

The Impact of Dietary Fiber on Gut Microbiota in Host Health and Disease

(2018) Kassem Makki et al.   Cell Host & Microbe

Actinobacteria: A relevant minority for the maintenance of gut homeostasis

(2018) Cecilia Binda et al.   DIGESTIVE AND LIVER DISEASE

Effects of fermented milk treatment on microbial population and metabolomic outcomes in a three-stage semi-continuous culture system

(2018) Kwang Hyun Cha et al.   FOOD CHEMISTRY

Fruits and vegetables, as a source of nutritional compounds and phytochemicals: Changes in bioactive compounds during lactic fermentation

(2018) Axelle Septembre-Malaterre et al.   FOOD RESEARCH INTERNATIONAL

Lactobacillus casei and Lactobacillus fermentum Strains Isolated from Mozzarella Cheese: Probiotic Potential, Safety, Acidifying Kinetic Parameters and Viability under Gastrointestinal Tract Conditions

(2018) Bruna Maria Salotti de Souza et al.   Probiotics and Antimicrobial Proteins

Modulation of gut microbiota from obese individuals by in vitro fermentation of citrus pectin in combination with Bifidobacterium longum BB-46

(2018) Fernanda Bianchi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Guava, orange and passion fruit by-products: Characterization and its impacts on kinetics of acidification and properties of probiotic fermented products

(2018) Sabrina N. Casarotti et al.   LWT-FOOD SCIENCE AND TECHNOLOGY

Production of Bioactive Peptides by Lactobacillus Species: From Gene to Application

(2018) Cyril Raveschot et al.   Frontiers in Microbiology

Gut Microbiota, Short-Chain Fatty Acids, and Herbal Medicines

(2018) Wuwen Feng et al.   Frontiers in Pharmacology

Impacts of dietary silver nanoparticles and probiotic administration on the microbiota of an in-vitro gut model

(2018) Cristina Cattò et al.   ENVIRONMENTAL POLLUTION

Probiotics improve gut microbiota dysbiosis in obese mice fed a high-fat or high-sucrose diet

(2018) Cheng Kong et al.   NUTRITION

Impact of multi-functional fermented goat milk beverage on gut microbiota in a dynamic colon model

(2017) Fernanda Campos Freire et al.   FOOD RESEARCH INTERNATIONAL

Growth of probiotic bacteria and characteristics of fermented milk containing fruit matrices

(2017) Abdullah Barat et al.   INTERNATIONAL JOURNAL OF DAIRY TECHNOLOGY

New Insights into the Diversity of the Genus Faecalibacterium

(2017) Leandro Benevides et al.   Frontiers in Microbiology

Geography, Ethnicity or Subsistence-Specific Variations in Human Microbiome Composition and Diversity

(2017) Vinod K. Gupta et al.   Frontiers in Microbiology

Functional Characterization of Novel Faecalibacterium prausnitzii Strains Isolated from Healthy Volunteers: A Step Forward in the Use of F. prausnitzii as a Next-Generation Probiotic

(2017) Rebeca Martín et al.   Frontiers in Microbiology

Atropos: specific, sensitive, and speedy trimming of sequencing reads

(2017) John P. Didion et al.   PeerJ

Safety of Lactobacillus plantarum ST8Sh and Its Bacteriocin

(2017) Svetoslav Dimitrov Todorov et al.   Probiotics and Antimicrobial Proteins

An insider's perspective: Bacteroides as a window into the microbiome

(2017) Aaron G. Wexler et al.   Nature Microbiology

Cereal products derived from wheat, sorghum, rice and oats alter the infant gut microbiota in vitro

(2017) Hasinika K. A. H. Gamage et al.   Scientific Reports

An exploratory study on the influence of orange juice on gut microbiota using a dynamic colonic model

(2016) Ana Luiza Rocha Faria Duque et al.   FOOD RESEARCH INTERNATIONAL

Impact of Encapsulated Lactobacillus casei 01 Along with Pasteurized Purple-Rice Drinks on Modulating Colon Microbiome using a Digestive Model

(2016) Pittaya Chaikham et al.   International Journal of Food Engineering

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Impact of Encapsulated Lactobacillus casei 01 Along with Pasteurized Purple-Rice Drinks on Modulating Colon Microbiome using a Digestive Model

(2016) Pittaya Chaikham et al.   International Journal of Food Engineering

The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota

(2016) Ilias Lagkouvardos et al.   Nature Microbiology

Alistipes inops sp. nov. and Coprobacter secundus sp. nov., isolated from human faeces

(2015) Andrei N. Shkoporov et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Fecal Microbiota Composition of Breast-Fed Infants Is Correlated With Human Milk Oligosaccharides Consumed

(2015) Mei Wang et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Beneficial effects of fermented vegetal beverages on human gastrointestinal microbial ecosystem in a simulator

(2014) Fernanda Bianchi et al.   FOOD RESEARCH INTERNATIONAL

Microbial Succession in the Gut: Directional Trends of Taxonomic and Functional Change in a Birth Cohort of Spanish Infants

(2014) Yvonne Vallès et al.   PLoS Genetics

Mixed culture syngas fermentation and conversion of carboxylic acids into alcohols

(2013) Kan Liu et al.   BIORESOURCE TECHNOLOGY

Faecalibacterium prausnitzii and human intestinal health

(2013) S Miquel et al.   CURRENT OPINION IN MICROBIOLOGY

Tailoring the probiotic potential of non-starter Lactobacillus strains from ripened Parmigiano Reggiano cheese by in vitro screening and principal component analysis

(2013) Lisa Solieri et al.   FOOD MICROBIOLOGY

Major phenylpropanoid-derived metabolites in the human gut can arise from microbial fermentation of protein

(2013) Wendy R. Russell et al.   MOLECULAR NUTRITION & FOOD RESEARCH

The startup bugs

(2013) Charles Schmidt   NATURE BIOTECHNOLOGY

Arabinogalactan and fructo-oligosaccharides have a different fermentation profile in the Simulator of the Human Intestinal Microbial Ecosystem (SHIME®)

(2013) Kathleen Terpend et al.   Environmental Microbiology Reports

Production of Ethanol from Sugars and Lignocellulosic Biomass byThermoanaerobacterJ1 Isolated from a Hot Spring in Iceland

(2012) Jan Eric Jessen et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Intestinal luminal nitrogen metabolism: Role of the gut microbiota and consequences for the host

(2012) Anne-Marie Davila et al.   PHARMACOLOGICAL RESEARCH

The study on the impact of glycated pea proteins on human intestinal bacteria

(2011) Świątecka Dominika et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Fibers from fruit by-products enhance probiotic viability and fatty acid profile and increase CLA content in yoghurts

(2011) Ana Paula do Espírito Santo et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

(2010) Alan W Walker et al.   ISME Journal

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

(2008) Harry J. Flint et al.   NATURE REVIEWS MICROBIOLOGY