Functional characterization of diverse type I-F CRISPR-associated transposons

Evolutionary and mechanistic diversity of Type I-F CRISPR-associated transposons

(2022) Sanne E. Klompe et al.   MOLECULAR CELL

Structural basis of transposon end recognition explains central features of Tn7 transposition systems

(2022) Zuzanna Kaczmarska et al.   MOLECULAR CELL

Systematic and quantitative view of the antiviral arsenal of prokaryotes

(2022) Florian Tesson et al.   Nature Communications

Repurposing CRISPR RNA-guided integrases system for one-step, efficient genomic integration of ultra-long DNA sequences

(2022) Zhou-Hua Cheng et al.   NUCLEIC ACIDS RESEARCH

Selective TnsC recruitment enhances the fidelity of RNA-guided transposition

(2022) Florian T. Hoffmann et al.   NATURE

clinker & clustermap.js: automatic generation of gene cluster comparison figures

(2021) Cameron L M Gilchrist et al.   BIOINFORMATICS

Dual modes of CRISPR-associated transposon homing

(2021) Makoto Saito et al.   CELL

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

(2021) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Orthogonal CRISPR-associated transposases for parallel and multiplexed chromosomal integration

(2021) Siqi Yang et al.   NUCLEIC ACIDS RESEARCH

CRISPRclassify: Repeat-Based Classification of CRISPR Loci

(2021) Matthew A. Nethery et al.   CRISPR Journal

Identification and classification of antiviral defence systems in bacteria and archaea with PADLOC reveals new system types

(2021) Leighton J Payne et al.   NUCLEIC ACIDS RESEARCH

Cargo Genes of Tn 7 -Like Transposons Comprise an Enormous Diversity of Defense Systems, Mobile Genetic Elements, and Antibiotic Resistance Genes

(2021) Sean Benler et al.   mBio

Species- and site-specific genome editing in complex bacterial communities

(2021) Benjamin E. Rubin et al.   Nature Microbiology

Diverse enzymatic activities mediate antiviral immunity in prokaryotes

(2020) Linyi Gao et al.   SCIENCE

Guide RNA Categorization Enables Target Site Choice in Tn7-CRISPR-Cas Transposons

(2020) Michael T. Petassi et al.   CELL

CRISPR RNA-guided integrases for high-efficiency, multiplexed bacterial genome engineering

(2020) Phuc Leo H. Vo et al.   NATURE BIOTECHNOLOGY

Assembly of long, error-prone reads using repeat graphs

(2019) Mikhail Kolmogorov et al.   NATURE BIOTECHNOLOGY

Transposon-encoded CRISPR–Cas systems direct RNA-guided DNA integration

(2019) Sanne E. Klompe et al.   NATURE

RNA-guided DNA insertion with CRISPR-associated transposases

(2019) Jonathan Strecker et al.   SCIENCE

Structural basis of DNA targeting by a transposon-encoded CRISPR–Cas system

(2019) Tyler S. Halpin-Healy et al.   NATURE

Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants

(2019) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

A detailed cell-free transcription-translation-based assay to decipher CRISPR protospacer-adjacent motifs

(2018) Colin S. Maxwell et al.   METHODS

Systematic discovery of antiphage defense systems in the microbial pangenome

(2018) Shany Doron et al.   SCIENCE

Recruitment of CRISPR-Cas systems by Tn7-like transposons

(2017) Joseph E. Peters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identifying and Visualizing Functional PAM Diversity across CRISPR-Cas Systems

(2016) Ryan T. Leenay et al.   MOLECULAR CELL

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

(2016) Wei Shen et al.   PLoS One

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Direct interaction between the TnsA and TnsB subunits controls the heteromeric Tn7 transposase

(2013) K. Y. Choi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system

(2011) Tomas Sinkunas et al.   EMBO JOURNAL

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Short motif sequences determine the targets of the prokaryotic CRISPR defence system

(2009)   MICROBIOLOGY-SGM

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes

(2008) S. J. J. Brouns et al.   SCIENCE

CRISPR Interference Limits Horizontal Gene Transfer in Staphylococci by Targeting DNA

(2008) Luciano A. Marraffini et al.   SCIENCE