Cargo Genes of Tn 7 -Like Transposons Comprise an Enormous Diversity of Defense Systems, Mobile Genetic Elements, and Antibiotic Resistance Genes
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Title
Cargo Genes of Tn
7
-Like Transposons Comprise an Enormous Diversity of Defense Systems, Mobile Genetic Elements, and Antibiotic Resistance Genes
Authors
Keywords
-
Journal
mBio
Volume 12, Issue 6, Pages -
Publisher
American Society for Microbiology
Online
2021-12-07
DOI
10.1128/mbio.02938-21
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Note: Only part of the references are listed.- clinker & clustermap.js: automatic generation of gene cluster comparison figures
- (2021) Cameron L M Gilchrist et al. BIOINFORMATICS
- Dual modes of CRISPR-associated transposon homing
- (2021) Makoto Saito et al. CELL
- Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation
- (2021) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Thousands of previously unknown phages discovered in whole-community human gut metagenomes
- (2021) Sean Benler et al. Microbiome
- Dissemination of novel Tn7 family transposons carrying genes for synthesis and uptake of fimsbactin siderophores among Acinetobacter baumannii isolates
- (2021) Mohammad Hamidian et al. Microbial Genomics
- Temporal shifts in antibiotic resistance elements govern phage-pathogen conflicts
- (2021) Kristen N. LeGault et al. SCIENCE
- Structural basis for target site selection in RNA-guided DNA transposition systems
- (2021) Jung-Un Park et al. SCIENCE
- TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis
- (2021) Karen Ross et al. mBio
- Unbiased profiling of CRISPR RNA-guided transposition products by long-read sequencing
- (2021) Phuc Leo H. Vo et al. Mobile DNA
- Horizontal transfer of antibiotic resistance genes in the human gut microbiome
- (2020) Ross S McInnes et al. CURRENT OPINION IN MICROBIOLOGY
- Metaviral SPAdes: assembly of viruses from metagenomic data
- (2020) Dmitry Antipov et al. BIOINFORMATICS
- Evolutionary and functional classification of the CARF domain superfamily, key sensors in prokaryotic antivirus defense
- (2020) Kira S Makarova et al. NUCLEIC ACIDS RESEARCH
- Pathways for horizontal gene transfer in bacteria revealed by a global map of their plasmids
- (2020) Santiago Redondo-Salvo et al. Nature Communications
- Experimental approaches to tracking mobile genetic elements in microbial communities
- (2020) Christina C Saak et al. FEMS MICROBIOLOGY REVIEWS
- Prokaryotic viperins produce diverse antiviral molecules
- (2020) Aude Bernheim et al. NATURE
- Diverse enzymatic activities mediate antiviral immunity in prokaryotes
- (2020) Linyi Gao et al. SCIENCE
- Diversity and classification of cyclic-oligonucleotide-based anti-phage signalling systems
- (2020) Adi Millman et al. Nature Microbiology
- A Large Tn7-like Transposon Confers Hyper-Resistance to Copper in Pseudomonas syringae pv. syringae.
- (2020) Francesca Aprile et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Guide RNA Categorization Enables Target Site Choice in Tn7-CRISPR-Cas Transposons
- (2020) Michael T. Petassi et al. CELL
- CheckV assesses the quality and completeness of metagenome-assembled viral genomes
- (2020) Stephen Nayfach et al. NATURE BIOTECHNOLOGY
- Rfam 14: expanded coverage of metagenomic, viral and microRNA families
- (2020) Ioanna Kalvari et al. NUCLEIC ACIDS RESEARCH
- CRISPR Arrays Away from cas Genes
- (2020) Sergey A. Shmakov et al. CRISPR Journal
- MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches
- (2019) Weizhi Song et al. Microbiome
- Integrated mobile genetic elements in Thaumarchaeota
- (2019) Mart Krupovic et al. ENVIRONMENTAL MICROBIOLOGY
- Plasmid detection and assembly in genomic and metagenomic datasets
- (2019) Dmitry Antipov et al. GENOME RESEARCH
- Transposon-encoded CRISPR–Cas systems direct RNA-guided DNA integration
- (2019) Sanne E. Klompe et al. NATURE
- CRISPR–Cas in mobile genetic elements: counter-defence and beyond
- (2019) Guilhem Faure et al. NATURE REVIEWS MICROBIOLOGY
- RNA-guided DNA insertion with CRISPR-associated transposases
- (2019) Jonathan Strecker et al. SCIENCE
- Validating the NCBI AMRFinder Tool and Resistance Gene Database Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of NARMS Isolates
- (2019) Michael Feldgarden et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- HH-suite3 for fast remote homology detection and deep protein annotation
- (2019) Martin Steinegger et al. BMC BIOINFORMATICS
- Targeted transposition with Tn7 elements: safe sites, mobile plasmids, CRISPR/Cas and beyond
- (2019) Joseph E. Peters MOLECULAR MICROBIOLOGY
- Cyclic GMP–AMP signalling protects bacteria against viral infection
- (2019) Daniel Cohen et al. NATURE
- Selection and Genome Plasticity as the Key Factors in the Evolution of Bacteria
- (2019) Itamar Sela et al. Physical Review X
- CDD/SPARCLE: the conserved domain database in 2020
- (2019) Shennan Lu et al. NUCLEIC ACIDS RESEARCH
- A Bioinformatic Analysis of Integrative Mobile Genetic Elements Highlights Their Role in Bacterial Adaptation
- (2019) Matthew G. Durrant et al. Cell Host & Microbe
- Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants
- (2019) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools
- (2019) Xiaofang Jiang et al. PLoS One
- Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation
- (2019) Eitan Yaffe et al. Nature Microbiology
- Toxins, Targets, and Triggers: An Overview of Toxin-Antitoxin Biology
- (2018) Alexander Harms et al. MOLECULAR CELL
- Systematic discovery of antiphage defense systems in the microbial pangenome
- (2018) Shany Doron et al. SCIENCE
- Clustering huge protein sequence sets in linear time
- (2018) Martin Steinegger et al. Nature Communications
- Phage puppet masters of the marine microbial realm
- (2018) Mya Breitbart et al. Nature Microbiology
- ICEberg 2.0: an updated database of bacterial integrative and conjugative elements
- (2018) Meng Liu et al. NUCLEIC ACIDS RESEARCH
- Origins and Evolution of the Global RNA Virome
- (2018) Yuri I. Wolf et al. mBio
- High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
- (2018) Chirag Jain et al. Nature Communications
- dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
- (2017) Matthew R Olm et al. ISME Journal
- UFBoot2: Improving the Ultrafast Bootstrap Approximation
- (2017) Diep Thi Hoang et al. MOLECULAR BIOLOGY AND EVOLUTION
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- Integrative and conjugative elements and their hosts: composition, distribution and organization
- (2017) Jean Cury et al. NUCLEIC ACIDS RESEARCH
- Recruitment of CRISPR-Cas systems by Tn7-like transposons
- (2017) Joseph E. Peters et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Disentangling the effects of selection and loss bias on gene dynamics
- (2017) Jaime Iranzo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The chromosomal organization of horizontal gene transfer in bacteria
- (2017) Pedro H. Oliveira et al. Nature Communications
- Coupling immunity and programmed cell suicide in prokaryotes: Life-or-death choices
- (2016) Eugene V. Koonin et al. BIOESSAYS
- Bacterial Autoimmunity Due to a Restriction-Modification System
- (2016) Maroš Pleška et al. CURRENT BIOLOGY
- Phylogenomic networks reveal limited phylogenetic range of lateral gene transfer by transduction
- (2016) Ovidiu Popa et al. ISME Journal
- Toxin-antitoxin systems in bacterial growth arrest and persistence
- (2016) Rebecca Page et al. Nature Chemical Biology
- Identification and analysis of integrons and cassette arrays in bacterial genomes
- (2016) Jean Cury et al. NUCLEIC ACIDS RESEARCH
- Consequences of Cas9 cleavage in the chromosome ofEscherichia coli
- (2016) Lun Cui et al. NUCLEIC ACIDS RESEARCH
- Nitrosomonas europaeacytochrome P460 is a direct link between nitrification and nitrous oxide emission
- (2016) Jonathan D. Caranto et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Turbulent Network Dynamics of Microbial Evolution and the Statistical Tree of Life
- (2015) Eugene V. Koonin JOURNAL OF MOLECULAR EVOLUTION
- The MG-RAST metagenomics database and portal in 2015
- (2015) Andreas Wilke et al. NUCLEIC ACIDS RESEARCH
- Gene dosage imbalances: action, reaction, and models
- (2015) Reiner A. Veitia et al. TRENDS IN BIOCHEMICAL SCIENCES
- Clustered Regularly Interspaced Short Palindromic Repeat-Dependent, Biofilm-Specific Death of Pseudomonas aeruginosa Mediated by Increased Expression of Phage-Related Genes
- (2015) Gary E. Heussler et al. mBio
- Protein Homeostasis Imposes a Barrier on Functional Integration of Horizontally Transferred Genes in Bacteria
- (2015) Shimon Bershtein et al. PLoS Genetics
- Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes
- (2014) Pere Puigbò et al. BMC BIOLOGY
- BREX is a novel phage resistance system widespread in microbial genomes
- (2014) T. Goldfarb et al. EMBO JOURNAL
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Heteromeric transposase elements: generators of genomic islands across diverse bacteria
- (2014) Joseph E. Peters et al. MOLECULAR MICROBIOLOGY
- Origins of major archaeal clades correspond to gene acquisitions from bacteria
- (2014) Shijulal Nelson-Sathi et al. NATURE
- Infernal 1.1: 100-fold faster RNA homology searches
- (2013) E. P. Nawrocki et al. BIOINFORMATICS
- Two novel PIWI families: roles in inter-genomic conflicts in bacteria and Mediator-dependent modulation of transcription in eukaryotes
- (2013) A Maxwell Burroughs et al. Biology Direct
- Comparative genomics of defense systems in archaea and bacteria
- (2013) Kira S. Makarova et al. NUCLEIC ACIDS RESEARCH
- Horizontal Gene Transfer Can Rescue Prokaryotes from Muller’s Ratchet: Benefit of DNA from Dead Cells and Population Subdivision
- (2013) Nobuto Takeuchi et al. G3-Genes Genomes Genetics
- Comprehensive comparative-genomic analysis of Type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes
- (2012) Kira S Makarova et al. Biology Direct
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- AbaR4 replaces AbaR3 in a carbapenem-resistant Acinetobacter baumannii isolate belonging to global clone 1 from an Australian hospital
- (2011) M. Hamidian et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Survey of Branch Support Methods Demonstrates Accuracy, Power, and Robustness of Fast Likelihood-based Approximation Schemes
- (2011) Maria Anisimova et al. SYSTEMATIC BIOLOGY
- Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes
- (2011) Todd J. Treangen et al. PLoS Genetics
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- Transposition into Replicating DNA Occurs through Interaction with the Processivity Factor
- (2009) Adam R. Parks et al. CELL
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Network analyses structure genetic diversity in independent genetic worlds
- (2009) S. Halary et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Deep Archaeal Roots of Eukaryotes
- (2008) N. Yutin et al. MOLECULAR BIOLOGY AND EVOLUTION
- Tn7 elements: Engendering diversity from chromosomes to episomes
- (2008) Adam R. Parks et al. PLASMID
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