Comparison between qPCR and RNA-seq reveals challenges of quantifying HLA expression

Regulation of HLA class I expression by non-coding gene variations

(2022) Florence Bettens et al.   PLoS Genetics

Unique Molecular Identifier-Based High-Resolution HLA Typing and Transcript Quantitation Using Long-Read Sequencing

(2022) Caleb Cornaby et al.   Frontiers in Genetics

HLA allele-specific expression: Methods, disease associations, and relevance in hematopoietic stem cell transplantation

(2022) Tiira Johansson et al.   Frontiers in Immunology

HLA-C dysregulation as a possible mechanism of immune evasion in SARS-CoV-2 and other RNA-virus infections

(2022) Eleonora Loi et al.   Frontiers in Immunology

SARS-CoV-2 accessory proteins ORF7a and ORF3a use distinct mechanisms to down-regulate MHC-I surface expression

(2022) Najla Arshad et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Variation and expression of HLA-DPB1 gene in HBV infection

(2021) Guojin Ou et al.   IMMUNOGENETICS

HLA RNA Sequencing With Unique Molecular Identifiers Reveals High Allele-Specific Variability in mRNA Expression

(2021) Tiira Johansson et al.   Frontiers in Immunology

The ORF8 protein of SARS-CoV-2 mediates immune evasion through down-regulating MHC-Ι

(2021) Yiwen Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Haplotype-Specific Expression Analysis of MHC Class II Genes in Healthy Individuals and Rheumatoid Arthritis Patients

(2021) Miranda Houtman et al.   Frontiers in Immunology

Allele-specific expression changes dynamically during T cell activation in HLA and other autoimmune loci

(2020) Maria Gutierrez-Arcelus et al.   NATURE GENETICS

Advances in the Evolutionary Understanding of MHC Polymorphism

(2020) Jacek Radwan et al.   TRENDS IN GENETICS

scHLAcount: allele-specific HLA expression from single-cell gene expression data

(2020) Charlotte A Darby et al.   BIOINFORMATICS

Tuning of human NK cells by endogenous HLA-C expression

(2020) Frederick J. Goodson-Gregg et al.   IMMUNOGENETICS

Capturing Differential Allele-Level Expression and Genotypes of All Classical HLA Loci and Haplotypes by a New Capture RNA-Seq Method

(2020) Fumiko Yamamoto et al.   Frontiers in Immunology

A single-cell atlas of the peripheral immune response in patients with severe COVID-19

(2020) Aaron J. Wilk et al.   NATURE MEDICINE

Increased HLA-G Expression in Tissue-Infiltrating Cells in Inflammatory Bowel Diseases

(2020) Sandro da Costa Ferreira et al.   DIGESTIVE DISEASES AND SCIENCES

The GTEx Consortium atlas of genetic regulatory effects across human tissues

(2020)   SCIENCE

HLA Class I Upregulation and Antiviral Immune Responses in Graves Disease

(2020) Therese Weider et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

MHC class II proteins mediate cross-species entry of bat influenza viruses

(2019) Umut Karakus et al.   NATURE

Class I transactivator, NLRC5: a central player in the MHC class I pathway and cancer immune surveillance

(2019) Saptha Vijayan et al.   IMMUNOGENETICS

Expression estimation and eQTL mapping for HLA genes with a personalized pipeline

(2019) Vitor R. C. Aguiar et al.   PLoS Genetics

Factors affecting HLA expression: A review

(2019) B. Sean Carey et al.   International Journal of Immunogenetics

IPD-IMGT/HLA Database

(2019) James Robinson et al.   NUCLEIC ACIDS RESEARCH

AltHapAlignR: improved accuracy of RNA-seq analyses through the use of alternative haplotypes

(2018) Wanseon Lee et al.   BIOINFORMATICS

Hla-mapper : An application to optimize the mapping of HLA sequences produced by massively parallel sequencing procedures

(2018) Erick C. Castelli et al.   HUMAN IMMUNOLOGY

ElevatedHLA-Aexpression impairs HIV control through inhibition of NKG2A-expressing cells

(2018) Veron Ramsuran et al.   SCIENCE

Relationship between HLA-DPA1 mRNA expression and susceptibility to hepatitis B

(2018) Guojin Ou et al.   JOURNAL OF VIRAL HEPATITIS

HLA-C downregulation by HIV-1 adapts to host HLA genotype

(2018) Nathaniel D. Bachtel et al.   PLoS Pathogens

Molecular evolution of elements controlling HLA-C expression: adaptation to a role as a KIR ligand regulating NK cell function

(2018) Stephen K. Anderson   HLA

Posttranscriptional Regulation of HLA-A Protein Expression by Alternative Polyadenylation Signals Involving the RNA-Binding Protein Syncrip

(2017) Smita Kulkarni et al.   JOURNAL OF IMMUNOLOGY

Sequence and Phylogenetic Analysis of the Untranslated Promoter Regions forHLAClass I Genes

(2017) Veron Ramsuran et al.   JOURNAL OF IMMUNOLOGY

Stability and Expression Levels of HLA-C on the Cell Membrane Modulate HIV-1 Infectivity

(2017) Francesca Parolini et al.   JOURNAL OF VIROLOGY

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Structural and regulatory diversity shape HLA-C protein expression levels

(2017) Gurman Kaur et al.   Nature Communications

A complete tool set for molecular QTL discovery and analysis

(2017) Olivier Delaneau et al.   Nature Communications

HLA-C Level Is Regulated by a Polymorphic Oct1 Binding Site in the HLA-C Promoter Region

(2016) Nicolas Vince et al.   AMERICAN JOURNAL OF HUMAN GENETICS

MHC class II super-enhancer increases surface expression of HLA-DR and HLA-DQ and affects cytokine production in autoimmune vitiligo

(2016) Giulio Cavalli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulatory polymorphisms modulate the expression of HLA class II molecules and promote autoimmunity

(2016) Prithvi Raj et al.   eLife

Expression of classical HLA class I molecules: regulation and clinical impacts

(2016) C. René et al.   HLA

Polyester: simulating RNA-seq datasets with differential transcript expression

(2015) Alyssa C. Frazee et al.   BIOINFORMATICS

5′ and 3′ untranslated regions contribute to the differential expression of specific HLA-A alleles

(2015) Céline René et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Epigenetic regulation of differentialHLA-Aallelic expression levels

(2015) Veron Ramsuran et al.   HUMAN MOLECULAR GENETICS

Relative Expression Levels of the HLA Class-I Proteins in Normal and HIV-Infected Cells

(2015) Richard Apps et al.   JOURNAL OF IMMUNOLOGY

High HLA-DP Expression and Graft-versus-Host Disease

(2015) Effie W. Petersdorf et al.   NEW ENGLAND JOURNAL OF MEDICINE

Mapping Bias Overestimates Reference Allele Frequencies at the HLA Genes in the 1000 Genomes Project Phase I Data

(2015) Débora Y. C. Brandt et al.   G3-Genes Genomes Genetics

HLA-C expression levels define permissible mismatches in hematopoietic cell transplantation

(2014) E. W. Petersdorf et al.   BLOOD

High-allelic variability in HLA-C mRNA expression: association with HLA-extended haplotypes

(2014) F Bettens et al.   GENES AND IMMUNITY

Major Histocompatibility Complex Genomics and Human Disease

(2013) John Trowsdale et al.   Annual Review of Genomics and Human Genetics

Transcriptome and genome sequencing uncovers functional variation in humans

(2013) Tuuli Lappalainen et al.   NATURE

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

(2013) Peter A C 't Hoen et al.   NATURE BIOTECHNOLOGY

The Genotype-Tissue Expression (GTEx) project

(2013) John Lonsdale et al.   NATURE GENETICS

Genetic interplay between HLA-C and MIR148A in HIV control and Crohn disease

(2013) S. Kulkarni et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influence of HLA-C Expression Level on HIV Control

(2013) R. Apps et al.   SCIENCE

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

A Novel Variant Marking HLA-DP Expression Levels Predicts Recovery from Hepatitis B Virus Infection

(2012) R. Thomas et al.   JOURNAL OF VIROLOGY

Multiple Sclerosis Risk Variant HLA-DRB1*1501 Associates with High Expression of DRB1 Gene in Different Human Populations

(2012) Antonio Alcina et al.   PLoS One

Up-regulated expression of HLA-DRB5 transcripts and high frequency of the HLA-DRB5*01:05 allele in scleroderma patients with interstitial lung disease

(2012) T. Odani et al.   RHEUMATOLOGY

HLA typing from RNA-Seq sequence reads

(2012) Sebastian Boegel et al.   Genome Medicine

Differential microRNA regulation of HLA-C expression and its association with HIV control

(2011) Smita Kulkarni et al.   NATURE

NLR family member NLRC5 is a transcriptional regulator of MHC class I genes

(2010) T. B. Meissner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HLA-C cell surface expression and control of HIV/AIDS correlate with a variant upstream of HLA-C

(2009) Rasmi Thomas et al.   NATURE GENETICS

The Yin and Yang of HLA and KIR in human disease

(2008) Smita Kulkarni et al.   SEMINARS IN IMMUNOLOGY