Transcriptomic analysis of testis and epididymis tissues from Banna mini-pig inbred line boars with single-molecule long-read sequencing

Single-molecule long-read sequencing reveals a conserved intact long RNA profile in sperm

(2021) Yu H. Sun et al.   Nature Communications

LncRNAs induce oxidative stress and spermatogenesis by regulating endoplasmic reticulum genes and pathways

(2021) Tie-Cheng Sun et al.   Aging-US

The landscape of molecular chaperones across human tissues reveals a layered architecture of core and variable chaperones

(2021) Netta Shemesh et al.   Nature Communications

T-complex protein 1 subunit zeta-2 (CCT6B) deficiency induces murine teratospermia

(2021) Peiyin Yang et al.   PeerJ

Genome‐wide single nucleotide polymorphism array and whole‐genome sequencing reveal the inbreeding progression of Banna minipig inbred line

(2021) J. L. Huo et al.   ANIMAL GENETICS

Thoroughbred stallion fertility is significantly associated with FKBP6 genotype but not with inbreeding or the contribution of a leading sire

(2021) C. Castaneda et al.   ANIMAL GENETICS

Identification and characterization of male reproduction-related genes in pig (Sus scrofa) using transcriptome analysis

(2020) Wenjing Yang et al.   BMC GENOMICS

Distinct Proteomic Profile of Spermatozoa from Men with Seminomatous and Non-Seminomatous Testicular Germ Cell Tumors

(2020) Manesh Kumar Panner Selvam et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The G178A polymorphic variant of INSL3 may be linked to cryptorchidism among Egyptian pediatric cohort

(2020) Sohier S. Abou EL-Ella et al.   PEDIATRIC SURGERY INTERNATIONAL

Panoramic transcriptome analysis and functional screening of long noncoding RNAs in mouse spermatogenesis

(2020) Kai Li et al.   GENOME RESEARCH

Stage-specific expression of DDX4 and c-kit at different developmental stages of the porcine testis

(2018) Ran Lee et al.   ANIMAL REPRODUCTION SCIENCE

Isoform-specific requirement for GSK3α in sperm for male fertility†

(2018) Rahul Bhattacharjee et al.   BIOLOGY OF REPRODUCTION

A survey of transcriptome complexity in Sus scrofa using single-molecule long-read sequencing

(2018) Yao Li et al.   DNA RESEARCH

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

(2018) Manuel Tardaguila et al.   GENOME RESEARCH

Patients with acephalic spermatozoa syndrome linked to SUN5 mutations have a favorable pregnancy outcome from ICSI

(2018) Jianzheng Fang et al.   HUMAN REPRODUCTION

Alternative splicing as a regulator of development and tissue identity

(2017) Francisco E. Baralle et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features

(2017) Yu-Jian Kang et al.   NUCLEIC ACIDS RESEARCH

LncRNA-mediated regulation of cell signaling in cancer

(2017) W-X Peng et al.   ONCOGENE

Analyses of Long Non-Coding RNA and mRNA profiling using RNA sequencing in chicken testis with extreme sperm motility

(2017) Yifan Liu et al.   Scientific Reports

Proteomic signatures of infertile men with clinical varicocele and their validation studies reveal mitochondrial dysfunction leading to infertility

(2016) Ashok Agarwal et al.   ASIAN JOURNAL OF ANDROLOGY

Deficiency of SPATA46, a Novel Nuclear Membrane Protein, Causes Subfertility in Male Mice

(2016) J. Chen et al.   BIOLOGY OF REPRODUCTION

Systematic Identification of Long Noncoding RNAs in Immature and Mature Porcine Testes1

(2016) Maoliang Ran et al.   BIOLOGY OF REPRODUCTION

Critical roles of long noncoding RNAs inDrosophilaspermatogenesis

(2016) Kejia Wen et al.   GENOME RESEARCH

Position-dependent interactions of Y-box protein 2 (YBX2) with mRNA enable mRNA storage in round spermatids by repressing mRNA translation and blocking translation-dependent mRNA decay

(2016) Kenneth C. Kleene   MOLECULAR REPRODUCTION AND DEVELOPMENT

Coming of age: ten years of next-generation sequencing technologies

(2016) Sara Goodwin et al.   NATURE REVIEWS GENETICS

Differential DNA methylation of the meiosis-specific geneFKBP6in testes of yak and cattle-yak hybrids

(2016) B Li et al.   REPRODUCTION IN DOMESTIC ANIMALS

Discrimination and characterization of Sertoli cell-only syndrome in non-obstructive azoospermia using cell-free seminal DDX4

(2016) Qiong Yu et al.   REPRODUCTIVE BIOMEDICINE ONLINE

Mechanisms and Regulation of Alternative Pre-mRNA Splicing

(2015) Yeon Lee et al.   Annual Review of Biochemistry

Functional and structural insights into the piRNA factor Maelstrom

(2015) Kaoru Sato et al.   FEBS LETTERS

Male fertility and apoptosis in normal spermatogenesis are regulated by vacuolar-ATPase isoform a2

(2015) Mukesh K. Jaiswal et al.   JOURNAL OF REPRODUCTIVE IMMUNOLOGY

VASA (DDX4) is a Putative Marker for Spermatogonia, Spermatocytes and Round Spermatids in Stallions

(2015) JY Kim et al.   REPRODUCTION IN DOMESTIC ANIMALS

Tissue-based map of the human proteome

(2015) M. Uhlen et al.   SCIENCE

PacBio Sequencing and Its Applications

(2015) Anthony Rhoads et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Toward the identification of a subset of unexplained infertility: a sperm proteomic approach

(2014) Susanna McReynolds et al.   FERTILITY AND STERILITY

Importance of  -defensins in sperm function

(2014) J. R. Dorin et al.   MOLECULAR HUMAN REPRODUCTION

Long noncoding RNAs in spermatogenesis: insights from recent high-throughput transcriptome studies

(2014) Alfred Chun-Shui Luk et al.   REPRODUCTION

Implication of FKBP6 for Male Fertility in Horses

(2014) R Schrimpf et al.   REPRODUCTION IN DOMESTIC ANIMALS

PIWI proteins and their interactors in piRNA biogenesis, germline development and gene expression

(2014) Hsueh-Yen Ku et al.   National Science Review

Expression of MAEL in nuage and non-nuage compartments of rat spermatogenic cells and colocalization with DDX4, DDX25 and MIWI

(2013) Miki Takebe et al.   HISTOCHEMISTRY AND CELL BIOLOGY

Defensins: Natural component of human innate immunity

(2013) Justyna Jarczak et al.   HUMAN IMMUNOLOGY

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

(2013) Liguo Wang et al.   NUCLEIC ACIDS RESEARCH

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

Long Non-Coding RNA Expression Profiling of Mouse Testis during Postnatal Development

(2013) Jin Sun et al.   PLoS One

Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis

(2013) Magali Soumillon et al.   Cell Reports

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Posttranscriptional Gene Regulation by Long Noncoding RNA

(2012) Je-Hyun Yoon et al.   JOURNAL OF MOLECULAR BIOLOGY

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Improving PacBio Long Read Accuracy by Short Read Alignment

(2012) Kin Fai Au et al.   PLoS One

Faster sequencers, larger datasets, new challenges

(2012) Christopher E Mason et al.   GENOME BIOLOGY

Structural basis for pregnenolone biosynthesis by the mitochondrial monooxygenase system

(2011) N. Strushkevich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Common Mutation in the Defensin DEFB126 Causes Impaired Sperm Function and Subfertility

(2011) T. L. Tollner et al.   Science Translational Medicine

A novel gene required for male fertility and functional CATSPER channel formation in spermatozoa

(2011) Jean-Ju Chung et al.   Nature Communications

Tsx Produces a Long Noncoding RNA and Has General Functions in the Germline, Stem Cells, and Brain

(2011) Montserrat C. Anguera et al.   PLoS Genetics

At the crossroads of steroid hormone biosynthesis: The role, substrate specificity and evolutionary development of CYP17

(2010) Andrei A. Gilep et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Na,K-ATPase  4 isoform is essential for sperm fertility

(2010) T. Jimenez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The adult boar testicular and epididymal transcriptomes

(2009) Benoît Guyonnet et al.   BMC GENOMICS

Identification of a novel human cancer/testis gene MAEL that is regulated by DNA methylation

(2009) Ling Xiao et al.   MOLECULAR BIOLOGY REPORTS

The genetics of inbreeding depression

(2009) Deborah Charlesworth et al.   NATURE REVIEWS GENETICS

Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches

(2009) Mo Chen et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data

(2009) Daniel Ramsköld et al.   PLoS Computational Biology

Mouse Maelstrom, a Component of Nuage, Is Essential for Spermatogenesis and Transposon Repression in Meiosis

(2008) Sarah F.C. Soper et al.   DEVELOPMENTAL CELL

A new LH receptor splice mutation responsible for male hypogonadism with subnormal sperm production in the propositus, and infertility with regular cycles in an affected sister

(2008) M. Bruysters et al.   HUMAN REPRODUCTION