Panoramic transcriptome analysis and functional screening of long noncoding RNAs in mouse spermatogenesis

The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty

(2020) Jingtao Guo et al.   Cell Stem Cell

Lack of AKAP3 disrupts integrity of the subcellular structure and proteome of mouse sperm and causes male sterility

(2020) Kaibiao Xu et al.   DEVELOPMENT

Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period

(2020) Kun Tan et al.   DEVELOPMENT

U1 snRNP regulates chromatin retention of noncoding RNAs

(2020) Yafei Yin et al.   NATURE

Combined Single-Cell Profiling of lncRNAs and Functional Screening Reveals that H19 Is Pivotal for Embryonic Hematopoietic Stem Cell Development

(2019) Jie Zhou et al.   Cell Stem Cell

High-throughput functional analysis of lncRNA core promoters elucidates rules governing tissue specificity

(2019) Kaia Mattioli et al.   GENOME RESEARCH

Cellular functions of long noncoding RNAs

(2019) Run-Wen Yao et al.   NATURE CELL BIOLOGY

ALDH1A3-regulated long non-coding RNA NRAD1 is a potential novel target for triple-negative breast tumors and cancer stem cells

(2019) Dejan Vidovic et al.   CELL DEATH AND DIFFERENTIATION

RNA profiling of human testicular cells identifies syntenic lncRNAs associated with spermatogenesis

(2019) A D Rolland et al.   HUMAN REPRODUCTION

Developmental dynamics of lncRNAs across mammalian organs and species

(2019) Ioannis Sarropoulos et al.   NATURE

A long noncoding RNA binding to QKI-5 regulates germ cell apoptosis via p38 MAPK signaling pathway

(2019) Kai Li et al.   Cell Death & Disease

Testis single-cell RNA-seq reveals the dynamics of de novo gene transcription and germline mutational bias in Drosophila

(2019) Evan Witt et al.   eLife

An expanded mouse testis transcriptome and mass spectrometry defines novel proteins

(2019) Jaya Gamble et al.   REPRODUCTION

Sertoli cell-only phenotype and scRNA-seq define PRAMEF12 as a factor essential for spermatogenesis in mice

(2019) Zhengpin Wang et al.   Nature Communications

Revealing stage-specific expression patterns of long noncoding RNAs along mouse spermatogenesis

(2019) María F. Trovero et al.   RNA Biology

Long Noncoding RNAs and Repetitive Elements: Junk or Intimate Evolutionary Partners?

(2019) Hyunmin Lee et al.   TRENDS IN GENETICS

Functional Classification and Experimental Dissection of Long Noncoding RNAs

(2018) Florian Kopp et al.   CELL

1700108J01Rik and 1700101O22Rik are mouse testis-specific long non-coding RNAs

(2018) Xiaohui Song et al.   HISTOCHEMISTRY AND CELL BIOLOGY

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Single-Cell RNA Sequencing Analysis Reveals Sequential Cell Fate Transition during Human Spermatogenesis

(2018) Mei Wang et al.   Cell Stem Cell

The adult human testis transcriptional cell atlas

(2018) Jingtao Guo et al.   CELL RESEARCH

The functions and unique features of long intergenic non-coding RNA

(2017) Julia D. Ransohoff et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome

(2017) Valentin Wucher et al.   NUCLEIC ACIDS RESEARCH

Meiotic Knockdown and Complementation Reveals Essential Role of RAD51 in Mouse Spermatogenesis

(2017) Jieqiong Dai et al.   Cell Reports

Transcriptome analysis of highly purified mouse spermatogenic cell populations: gene expression signatures switch from meiotic-to postmeiotic-related processes at pachytene stage

(2016) Irene da Cruz et al.   BMC GENOMICS

Critical roles of long noncoding RNAs inDrosophilaspermatogenesis

(2016) Kejia Wen et al.   GENOME RESEARCH

Parallel evolution of male germline epigenetic poising and somatic development in animals

(2016) Bluma J Lesch et al.   NATURE GENETICS

Unique features of long non-coding RNA biogenesis and function

(2016) Jeffrey J. Quinn et al.   NATURE REVIEWS GENETICS

Challenges of CRISPR/Cas9 applications for long non-coding RNA genes

(2016) Ashish Goyal et al.   NUCLEIC ACIDS RESEARCH

Spermatogenesis: The Commitment to Meiosis

(2016) Michael D. Griswold   PHYSIOLOGICAL REVIEWS

Expression dynamics, relationships, and transcriptional regulations of diverse transcripts in mouse spermatogenic cells

(2016) Xiwen Lin et al.   RNA Biology

Linking Long Noncoding RNA Localization and Function

(2016) Ling-Ling Chen   TRENDS IN BIOCHEMICAL SCIENCES

Long non-coding RNA profiling of human lymphoid progenitor cells reveals transcriptional divergence of B cell and T cell lineages

(2015) David Casero et al.   NATURE IMMUNOLOGY

p204-Initiated Innate Antiviral Response in Mouse Leydig Cells1

(2014) Weiwei Zhu et al.   BIOLOGY OF REPRODUCTION

High-Resolution Profiling of Novel Transcribed Regions During Rat Spermatogenesis1

(2014) Frédéric Chalmel et al.   BIOLOGY OF REPRODUCTION

Chromatin and Transcription Transitions of Mammalian Adult Germline Stem Cells and Spermatogenesis

(2014) Saher Sue Hammoud et al.   Cell Stem Cell

The evolution of lncRNA repertoires and expression patterns in tetrapods

(2014) Anamaria Necsulea et al.   NATURE

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

(2014) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Long noncoding RNAs in spermatogenesis: insights from recent high-throughput transcriptome studies

(2014) Alfred Chun-Shui Luk et al.   REPRODUCTION

Sequential expression of long noncoding RNA as mRNA gene expression in specific stages of mouse spermatogenesis

(2014) Meng Liang et al.   Scientific Reports

Considerations when investigating lncRNA function in vivo

(2014) Andrew R Bassett et al.   eLife

Expression Profiling Reveals Developmentally Regulated lncRNA Repertoire in the Mouse Male Germline1

(2013) Jianqiang Bao et al.   BIOLOGY OF REPRODUCTION

Long Noncoding RNAs: Cellular Address Codes in Development and Disease

(2013) Pedro J. Batista et al.   CELL

Long non-coding RNAs: new players in cell differentiation and development

(2013) Alessandro Fatica et al.   NATURE REVIEWS GENETICS

Long Non-Coding RNA Expression Profiling of Mouse Testis during Postnatal Development

(2013) Jin Sun et al.   PLoS One

Dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis

(2013) Haiyun Gan et al.   Nature Communications

Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis

(2013) Magali Soumillon et al.   Cell Reports

Multiple knockout mouse models reveal lincRNAs are required for life and brain development

(2013) Martin Sauvageau et al.   eLife

Genome Regulation by Long Noncoding RNAs

(2012) John L. Rinn et al.   Annual Review of Biochemistry

Modular regulatory principles of large non-coding RNAs

(2012) Mitchell Guttman et al.   NATURE

SpermatogenesisOnline 1.0: a resource for spermatogenesis based on manual literature curation and genome-wide data mining

(2012) Yuanwei Zhang et al.   NUCLEIC ACIDS RESEARCH

The lncRNA Malat1 Is Dispensable for Mouse Development but Its Transcription Plays a cis-Regulatory Role in the Adult

(2012) Bin Zhang et al.   Cell Reports

Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions

(2011) Ci Chu et al.   MOLECULAR CELL

Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes

(2010) M.-C. Tsai et al.   SCIENCE

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Gene deletion of inositol hexakisphosphate kinase 1 reveals inositol pyrophosphate regulation of insulin secretion, growth, and spermiogenesis

(2008) R. Bhandari et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA