Genome‐wide single nucleotide polymorphism array and whole‐genome sequencing reveal the inbreeding progression of Banna minipig inbred line

Runs of homozygosity provide a genome landscape picture of inbreeding and genetic history of European autochthonous and commercial pig breeds

(2021) G. Schiavo et al.   ANIMAL GENETICS

How to study runs of homozygosity using PLINK? A guide for analyzing medium density SNP data in livestock and pet species

(2020) R. Meyermans et al.   BMC GENOMICS

An improved pig reference genome sequence to enable pig genetics and genomics research

(2020) Amanda Warr et al.   GigaScience

Runs of homozygosity: windows into population history and trait architecture

(2018) Francisco C. Ceballos et al.   NATURE REVIEWS GENETICS

The major histocompatibility complex homozygous inbred Babraham pig as a resource for veterinary and translational medicine

(2018) J. C. Schwartz et al.   HLA

Inactivation of porcine endogenous retrovirus in pigs using CRISPR-Cas9

(2017) Dong Niu et al.   SCIENCE

Runs of homozygosity: current knowledge and applications in livestock

(2016) E. Peripolli et al.   ANIMAL GENETICS

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

(2016) Maxim V. Kuleshov et al.   NUCLEIC ACIDS RESEARCH

Unraveling the Swine Genome: Implications for Human Health

(2015) Lawrence B. Schook et al.   Annual Review of Animal Biosciences

Completion of the swine genome will simplify the production of swine as a large animal biomedical model

(2012) Eric M Walters et al.   BMC Medical Genomics

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

The pig: a model for human infectious diseases

(2011) François Meurens et al.   TRENDS IN MICROBIOLOGY

Cloning and functional characterization of pig CMP-N-acetylneuraminic acid hydroxylase for the synthesis ofN-glycolylneuraminic acid as the xenoantigenic determinant in pig–human xenotransplantation

(2010) Kwon-Ho Song et al.   BIOCHEMICAL JOURNAL

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology

(2009) Antonio M. Ramos et al.   PLoS One