DeepHEMNMA: ResNet-based hybrid analysis of continuous conformational heterogeneity in cryo-EM single particle images
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Title
DeepHEMNMA: ResNet-based hybrid analysis of continuous conformational heterogeneity in cryo-EM single particle images
Authors
Keywords
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Journal
Frontiers in Molecular Biosciences
Volume 9, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2022-09-08
DOI
10.3389/fmolb.2022.965645
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Note: Only part of the references are listed.- CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks
- (2021) Ellen D. Zhong et al. NATURE METHODS
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- (2021) John Jumper et al. NATURE
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- (2021) Muyuan Chen et al. NATURE METHODS
- A Bayesian approach to extracting free-energy profiles from cryo-electron microscopy experiments
- (2021) Julian Giraldo-Barreto et al. Scientific Reports
- DeepCycle reconstructs a cyclic cell cycle trajectory from unsegmented cell images using convolutional neural networks
- (2020) Luca Rappez et al. Molecular Systems Biology
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- (2020) Takanori Nakane et al. NATURE
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- (2020) Ali Dashti et al. Nature Communications
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- (2020) Mingxu Hu et al. JOURNAL OF STRUCTURAL BIOLOGY
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- (2019) Amit Moscovich et al. INVERSE PROBLEMS
- Real-time cryo-electron microscopy data preprocessing with Warp
- (2019) Dimitry Tegunov et al. NATURE METHODS
- Hybrid Electron Microscopy Normal Mode Analysis with Scipion
- (2019) Mohamad Harastani et al. PROTEIN SCIENCE
- Hyper-molecules: on the representation and recovery of dynamical structures for applications in flexible macro-molecules in cryo-EM
- (2019) Roy R Lederman et al. INVERSE PROBLEMS
- Structure and Conformational Dynamics of the Human Spliceosomal B act Complex
- (2018) David Haselbach et al. CELL
- Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy
- (2018) C. O. S. Sorzano et al. Acta Crystallographica Section F-Structural Biology Communications
- cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
- (2017) Ali Punjani et al. NATURE METHODS
- New generation of elastic network models
- (2016) José Ramón López-Blanco et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Coarse-Graining of Volumes for Modeling of Structure and Dynamics in Electron Microscopy: Algorithm to Automatically Control Accuracy of Approximation
- (2016) Slavica Jonic et al. IEEE Journal of Selected Topics in Signal Processing
- Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy
- (2016) J.M. de la Rosa-Trevín et al. JOURNAL OF STRUCTURAL BIOLOGY
- 2.3 A resolution cryo-EM structure of human p97 and mechanism of allosteric inhibition
- (2016) S. Banerjee et al. SCIENCE
- Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome
- (2016) Priyanka D Abeyrathne et al. eLife
- Directly reconstructing principal components of heterogeneous particles from cryo-EM images
- (2015) Hemant D. Tagare et al. JOURNAL OF STRUCTURAL BIOLOGY
- Structure and conformational states of the bovine mitochondrial ATP synthase by cryo-EM
- (2015) Anna Zhou et al. eLife
- Sampling the conformational space of the catalytic subunit of human γ-secretase
- (2015) Xiao-chen Bai et al. eLife
- Trajectories of the ribosome as a Brownian nanomachine
- (2014) Ali Dashti et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structures of Yeast 80S Ribosome-tRNA Complexes in the Rotated and Nonrotated Conformations
- (2014) Egor Svidritskiy et al. STRUCTURE
- Iterative Elastic 3D-to-2D Alignment Method Using Normal Modes for Studying Structural Dynamics of Large Macromolecular Complexes
- (2014) Qiyu Jin et al. STRUCTURE
- Likelihood-based classification of cryo-EM images using FREALIGN
- (2013) Dmitry Lyumkis et al. JOURNAL OF STRUCTURAL BIOLOGY
- 3DEM Loupe: analysis of macromolecular dynamics using structures from electron microscopy
- (2013) R. Nogales-Cadenas et al. NUCLEIC ACIDS RESEARCH
- RELION: Implementation of a Bayesian approach to cryo-EM structure determination
- (2012) Sjors H.W. Scheres JOURNAL OF STRUCTURAL BIOLOGY
- Global Dynamics of Proteins: Bridging Between Structure and Function
- (2010) Ivet Bahar et al. Annual Review of Biophysics
- Normal mode analysis for proteins
- (2008) Lars Skjaerven et al. JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM
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