Evolutionary inference across eukaryotes identifies universal features shaping organelle gene retention
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Evolutionary inference across eukaryotes identifies universal features shaping organelle gene retention
Authors
Keywords
-
Journal
Cell Systems
Volume -, Issue -, Pages -
Publisher
Elsevier BV
Online
2022-09-16
DOI
10.1016/j.cels.2022.08.007
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Anaerobic endosymbiont generates energy for ciliate host by denitrification
- (2021) Jon S. Graf et al. NATURE
- Avoiding organelle mutational meltdown across eukaryotes with or without a germline bottleneck
- (2021) David M. Edwards et al. PLOS BIOLOGY
- Biology must generate ideas as well as data
- (2021) Paul Nurse NATURE
- Paulinella , a model for understanding plastid primary endosymbiosis
- (2020) Arwa Gabr et al. JOURNAL OF PHYCOLOGY
- Gene Loss and Evolution of the Plastome
- (2020) Tapan Kumar Mohanta et al. Genes
- Morphology, ultrastructure, genomics, and phylogeny of Euplotes vanleeuwenhoeki sp. nov. and its ultra-reduced endosymbiont “Candidatus Pinguicoccus supinus” sp. nov.
- (2020) Valentina Serra et al. Scientific Reports
- Evolutionary dynamics of the chromatophore genome in three photosynthetic Paulinella species
- (2019) Duckhyun Lhee et al. Scientific Reports
- Evolving mtDNA populations within cells
- (2019) Iain G. Johnston et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- The fate of obligate endosymbionts: reduction, integration, or extinction
- (2019) Filip Husnik et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Should I stay or should I go? Retention and loss of components in vestigial endosymbiotic organelles
- (2019) Kacper Maciszewski et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- HyperTraPS: Inferring Probabilistic Patterns of Trait Acquisition in Evolutionary and Disease Progression Pathways
- (2019) Sam F. Greenbury et al. Cell Systems
- ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
- (2018) Emmanuel Paradis et al. BIOINFORMATICS
- The Genome Sequence of “Candidatus Fokinia solitaria”: Insights on Reductive Evolution in Rickettsiales
- (2018) Anna M Floriano et al. Genome Biology and Evolution
- Cytonuclear integration and co-evolution
- (2018) Daniel B. Sloan et al. NATURE REVIEWS GENETICS
- Tension and Resolution: Dynamic, Evolving Populations of Organelle Genomes within Plant Cells
- (2018) Iain G. Johnston Molecular Plant
- Parallel genome reduction in symbionts descended from closely related free-living bacteria
- (2017) Vittorio Boscaro et al. Nature Ecology & Evolution
- Genomic divergence within non-photosynthetic cyanobacterial endosymbionts in rhopalodiacean diatoms
- (2017) Takuro Nakayama et al. Scientific Reports
- Why mitochondria need a genome revisited
- (2016) Patrik Björkholm et al. FEBS LETTERS
- ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
- (2016) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data
- (2016) Guangchuang Yu et al. Methods in Ecology and Evolution
- Why Have Organelles Retained Genomes?
- (2016) John F. Allen et al. Cell Systems
- Evolutionary Inference across Eukaryotes Identifies Specific Pressures Favoring Mitochondrial Gene Retention
- (2016) Iain G. Johnston et al. Cell Systems
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- Endosymbiotic theories for eukaryote origin
- (2015) William F. Martin et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremes
- (2015) David Roy Smith et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Why chloroplasts and mitochondria retain their own genomes and genetic systems: Colocation for redox regulation of gene expression
- (2015) John F. Allen PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Eukaryogenesis, how special really?
- (2015) Austin Booth et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees
- (2014) Matthew W. Pennell et al. BIOINFORMATICS
- Oxidative Stress Is Not a Major Contributor to Somatic Mitochondrial DNA Mutations
- (2014) Leslie S. Itsara et al. PLoS Genetics
- Model selection in systems and synthetic biology
- (2013) Paul Kirk et al. CURRENT OPINION IN BIOTECHNOLOGY
- Massively Convergent Evolution for Ribosomal Protein Gene Content in Plastid and Mitochondrial Genomes
- (2013) Uwe-G Maier et al. Genome Biology and Evolution
- Small, Smaller, Smallest: The Origins and Evolution of Ancient Dual Symbioses in a Phloem-Feeding Insect
- (2013) Gordon M. Bennett et al. Genome Biology and Evolution
- A Nondegenerate Penalized Likelihood Estimator for Variance Parameters in Multilevel Models
- (2013) Yeojin Chung et al. PSYCHOMETRIKA
- Ultra-Sensitive Sequencing Reveals an Age-Related Increase in Somatic Mitochondrial Mutations That Are Inconsistent with Oxidative Damage
- (2013) Scott R. Kennedy et al. PLoS Genetics
- High Levels of Gene Expression Explain the Strong Evolutionary Constraint of Mitochondrial Protein-Coding Genes
- (2012) B. Nabholz et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evolution of Photosynthesis
- (2011) Martin F. Hohmann-Marriott et al. Annual Review of Plant Biology
- The NCBI Taxonomy database
- (2011) S. Federhen NUCLEIC ACIDS RESEARCH
- phytools: an R package for phylogenetic comparative biology (and other things)
- (2011) Liam J. Revell Methods in Ecology and Evolution
- Chemical Models of Peptide Formation in Translation
- (2010) R. Edward Watts et al. BIOCHEMISTRY
- phangorn: phylogenetic analysis in R
- (2010) Klaus Peter Schliep BIOINFORMATICS
- On the use of non-local prior densities in Bayesian hypothesis tests
- (2010) Valen E. Johnson et al. JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY
- Endosymbiotic Gene Transfer and Transcriptional Regulation of Transferred Genes in Paulinella chromatophora
- (2010) E. C. M. Nowack et al. MOLECULAR BIOLOGY AND EVOLUTION
- The energetics of genome complexity
- (2010) Nick Lane et al. NATURE
- PDBe: Protein Data Bank in Europe
- (2010) S. Velankar et al. NUCLEIC ACIDS RESEARCH
- The endosymbiotic origin, diversification and fate of plastids
- (2010) P. J. Keeling PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Evolutionary Systems Biology of Amino Acid Biosynthetic Cost in Yeast
- (2010) Michael D. Barton et al. PLoS One
- Genome Erosion in a Nitrogen-Fixing Vertically Transmitted Endosymbiotic Multicellular Cyanobacterium
- (2010) Liang Ran et al. PLoS One
- pH-sensitivity of the ribosomal peptidyl transfer reaction dependent on the identity of the A-site aminoacyl-tRNA
- (2010) M. Johansson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Biopython: freely available Python tools for computational molecular biology and bioinformatics
- (2009) P. J. A. Cock et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Do organellar genomes function as long-term redox damage sensors?
- (2009) Alan F. Wright et al. TRENDS IN GENETICS
- Origin of an Alternative Genetic Code in the Extremely Small and GC–Rich Genome of a Bacterial Symbiont
- (2009) John P. McCutcheon et al. PLoS Genetics
- Assembly reflects evolution of protein complexes
- (2008) Emmanuel D. Levy et al. NATURE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started