Changes in the genomes and methylomes of three Salmonella enterica serovars after long-term storage in ground black pepper

Chemotaxis and Shorter O-Antigen Chain Length Contribute to the Strong Desiccation Tolerance of a Food-Isolated Cronobacter sakazakii Strain

(2022) Chengqian Qian et al.   Frontiers in Microbiology

Structure of a full-length bacterial polysaccharide co-polymerase

(2021) Benjamin Wiseman et al.   Nature Communications

Genetic changes are introduced by repeated exposure of Salmonella spiked in low water activity and high fat matrix to heat

(2021) Leen Baert et al.   Scientific Reports

Genomic evidence of environmental and resident Salmonella Senftenberg and Montevideo contamination in the pistachio supply-chain

(2021) Julie Haendiges et al.   PLoS One

Temporal Dynamics of Salmonella enterica subsp. enterica Serovar Agona Isolates From a Recurrent Multistate Outbreak

(2020) Maria Hoffmann et al.   Frontiers in Microbiology

Identification of Novel Genes Mediating Survival of Salmonella on Low-Moisture Foods via Transposon Sequencing Analysis

(2020) Victor Jayeola et al.   Frontiers in Microbiology

Dry pasteurization of paprika (Capsicum annuum L.) by short time intensive microwave-infrared radiation: Inactivation of Salmonella Typhimurium and Aspergillus flavus considering quality degradation kinetics

(2020) Shivanand Shankarrao Shirkole et al.   FOOD CHEMISTRY

Flotillin homologue is involved in the swimming behavior of Escherichia coli

(2019) Felipe Padilla-Vaca et al.   ARCHIVES OF MICROBIOLOGY

Transcriptome sequencing reveals genes and adaptation pathways in Salmonella Typhimurium inoculated in four low water activity foods

(2019) Aline Crucello et al.   FOOD MICROBIOLOGY

Codon usage of highly expressed genes affects proteome-wide translation efficiency

(2018) Idan Frumkin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Adaptation to Growth Under Laboratory Conditions in Escherichia coli and Salmonella enterica

(2018) Anna Knöppel et al.   Frontiers in Microbiology

Deciphering bacterial epigenomes using modern sequencing technologies

(2018) John Beaulaurier et al.   NATURE REVIEWS GENETICS

Xerotolerant bacteria: surviving through a dry spell

(2017) Pedro H. Lebre et al.   NATURE REVIEWS MICROBIOLOGY

Codon optimality, bias and usage in translation and mRNA decay

(2017) Gavin Hanson et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Comparative genome and methylome analysis reveals restriction/modification system diversity in the gut commensal Bifidobacterium breve

(2017) Francesca Bottacini et al.   NUCLEIC ACIDS RESEARCH

Comparative Genomics Reveals the Diversity of Restriction-Modification Systems and DNA Methylation Sites in Listeria monocytogenes

(2016) Poyin Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Modeling the Effect of Temperature and Water Activity on the Thermal Resistance of Salmonella Enteritidis PT 30 in Wheat Flour

(2016) DANIELLE F. SMITH et al.   JOURNAL OF FOOD PROTECTION

The Epigenomic Landscape of Prokaryotes

(2016) Matthew J. Blow et al.   PLoS Genetics

Sources and Risk Factors for Contamination, Survival, Persistence, and Heat Resistance of Salmonella in Low-Moisture Foods

(2016) RICHARD PODOLAK et al.   JOURNAL OF FOOD PROTECTION

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Structure-function relationships governing activity and stability of a DNA alkylation damage repair thermostable protein

(2015) Giuseppe Perugino et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Methylation Patterns in Salmonella enterica Subsp. enterica Serovars

(2015) Cary Pirone-Davies et al.   PLoS One

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Foodborne illness outbreaks from microbial contaminants in spices, 1973–2010

(2013) Jane M. Van Doren et al.   FOOD MICROBIOLOGY

Recalls of Foods due to Microbiological Contamination Classified by the U.S. Food and Drug Administration, Fiscal Years 2003 through 2011

(2013) MANASHI DEY et al.   JOURNAL OF FOOD PROTECTION

Phenotypic Characterization of Salmonella Isolated from Food Production Environments Associated with Low–Water Activity Foods

(2013) SARAH FINN et al.   JOURNAL OF FOOD PROTECTION

Low–Water Activity Foods: Increased Concern as Vehicles of Foodborne Pathogens

(2013) LARRY R. BEUCHAT et al.   JOURNAL OF FOOD PROTECTION

Residues located inside the Escherichia coli FepE protein oligomer are essential for lipopolysaccharide O-antigen modal chain length regulation

(2013) E. N. H. Tran et al.   MICROBIOLOGY-SGM

Flotillins functionally organize the bacterial membrane

(2013) Juri Niño Bach et al.   MOLECULAR MICROBIOLOGY

Conflicting roles for a cell surface modification inSalmonella

(2013) John F. May et al.   MOLECULAR MICROBIOLOGY

Type I restriction enzymes and their relatives

(2013) W. A. M. Loenen et al.   NUCLEIC ACIDS RESEARCH

Comprehensive Methylome Characterization of Mycoplasma genitalium and Mycoplasma pneumoniae at Single-Base Resolution

(2013) Maria Lluch-Senar et al.   PLoS Genetics

Mycobacterial MazG Safeguards Genetic Stability via Housecleaning of 5-OH-dCTP

(2013) Liang-Dong Lyu et al.   PLoS Pathogens

DNA Methylation Impacts Gene Expression and Ensures Hypoxic Survival of Mycobacterium tuberculosis

(2013) Scarlet S. Shell et al.   PLoS Pathogens

Mechanisms of survival, responses and sources of Salmonella in low-moisture environments

(2013) Sarah Finn et al.   Frontiers in Microbiology

Global Transcriptional Analysis of Dehydrated Salmonella enterica Serovar Typhimurium

(2012) Nadia Gruzdev et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach

(2012) Marc W Allard et al.   BMC GENOMICS

Growth and survival of Salmonella in ground black pepper (Piper nigrum)

(2012) Susanne E. Keller et al.   FOOD MICROBIOLOGY

Prevalence, serotype diversity, and antimicrobial resistance of Salmonella in imported shipments of spice offered for entry to the United States, FY2007–FY2009

(2012) Jane M. Van Doren et al.   FOOD MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Effect of Desiccation on Tolerance ofSalmonella entericato Multiple Stresses

(2011) Nadia Gruzdev et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transcriptome sequencing of Salmonella enterica serovar Enteritidis under desiccation and starvation stress in peanut oil

(2011) Xiangyu Deng et al.   FOOD MICROBIOLOGY

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

(2011) Tyson A. Clark et al.   NUCLEIC ACIDS RESEARCH

Mycobacterial MazG Is a Novel NTP Pyrophosphohydrolase Involved in Oxidative Stress Response

(2010) Liang-dong Lu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Molecular Determination of H Antigens of Salmonella by Use of a Microsphere-Based Liquid Array

(2010) J. R. McQuiston et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS

Mutational Robustness of Ribosomal Protein Genes

(2010) P. A. Lind et al.   SCIENCE

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Role of outer membrane lipopolysaccharides in the protection of Salmonella enterica serovar Typhimurium from desiccation damage

(2008) Penelope Garmiri et al.   FEMS MICROBIOLOGY LETTERS

Regulation of the Salmonella enterica std Fimbrial Operon by DNA Adenine Methylation, SeqA, and HdfR

(2008) M. Jakomin et al.   JOURNAL OF BACTERIOLOGY

Bacterial polysaccharide co-polymerases share a common framework for control of polymer length

(2008) Ante Tocilj et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Sequence-structure relationships in polysaccharide co-polymerase (PCP) proteins

(2008) Renato Morona et al.   TRENDS IN BIOCHEMICAL SCIENCES