Type I restriction enzymes and their relatives

Entering the era of bacterial epigenomics with single molecule real time DNA sequencing

(2013) Brigid M Davis et al.   CURRENT OPINION IN MICROBIOLOGY

Comprehensive Methylome Characterization of Mycoplasma genitalium and Mycoplasma pneumoniae at Single-Base Resolution

(2013) Maria Lluch-Senar et al.   PLoS Genetics

Structure and operation of the DNA-translocating type I DNA restriction enzymes

(2012) C. K. Kennaway et al.   GENES & DEVELOPMENT

Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

(2012) Gang Fang et al.   NATURE BIOTECHNOLOGY

The Type ISP Restriction-Modification enzymes LlaBIII and LlaGI use a translocation-collision mechanism to cleave non-specific DNA distant from their recognition sites

(2012) E. Sisakova et al.   NUCLEIC ACIDS RESEARCH

Organization of the BcgI restriction–modification protein for the transfer of one methyl group to DNA

(2012) Rachel M. Smith et al.   NUCLEIC ACIDS RESEARCH

Exploring the DNA mimicry of the Ocr protein of phage T7

(2012) Gareth A. Roberts et al.   NUCLEIC ACIDS RESEARCH

DNA cleavage by Type ISP Restriction–Modification enzymes is initially targeted to the 3′-5′ strand

(2012) Kara van Aelst et al.   NUCLEIC ACIDS RESEARCH

Organization of the BcgI restriction-modification protein for the cleavage of eight phosphodiester bonds in DNA

(2012) Rachel M. Smith et al.   NUCLEIC ACIDS RESEARCH

The methylomes of six bacteria

(2012) Iain A. Murray et al.   NUCLEIC ACIDS RESEARCH

Sequence, structure and functional diversity of PD-(D/E)XK phosphodiesterase superfamily

(2012) Kamil Steczkiewicz et al.   NUCLEIC ACIDS RESEARCH

Success of a suicidal defense strategy against infection in a structured habitat

(2012) Masaki Fukuyo et al.   Scientific Reports

Crystallization and preliminary crystallographic analysis of the type IIL restriction enzymeMmeI in complex with DNA

(2011) Scott J. Callahan et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

Revisiting the Central Dogma One Molecule at a Time

(2011) Carlos Bustamante et al.   CELL

Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine

(2011) Chun-Xiao Song et al.   NATURE METHODS

DNA translocation by type III restriction enzymes: a comparison of current models of their operation derived from ensemble and single-molecule measurements

(2011) D. T. F. Dryden et al.   NUCLEIC ACIDS RESEARCH

Concerted action at eight phosphodiester bonds by the BcgI restriction endonuclease

(2011) J. J. T. Marshall et al.   NUCLEIC ACIDS RESEARCH

DNA cleavage site selection by Type III restriction enzymes provides evidence for head-on protein collisions following 1D bidirectional motion

(2011) Friedrich W. Schwarz et al.   NUCLEIC ACIDS RESEARCH

Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI

(2011) Betty W. Shen et al.   NUCLEIC ACIDS RESEARCH

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

(2011) Tyson A. Clark et al.   NUCLEIC ACIDS RESEARCH

Structure of HsdS Subunit from Thermoanaerobacter tengcongensis Sheds Lights on Mechanism of Dynamic Opening and Closing of Type I Methyltransferase

(2011) Pu Gao et al.   PLoS One

Domain Movement within a Gene: A Novel Evolutionary Mechanism for Protein Diversification

(2011) Yoshikazu Furuta et al.   PLoS One

Substrate specificity and mutational analysis of Kluyveromyces lactis  -toxin, a eukaryal tRNA anticodon nuclease

(2011) R. Jain et al.   RNA

Maintaining a sense of direction during long-range communication on DNA

(2010) Mark D. Szczelkun et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

The Type IIB restriction endonucleases

(2010) Jacqueline J.T. Marshall et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

The phage-host arms race: Shaping the evolution of microbes

(2010) Adi Stern et al.   BIOESSAYS

Antibiotic resistance in the environment: a link to the clinic?

(2010) Gerard D Wright   CURRENT OPINION IN MICROBIOLOGY

SF1 and SF2 helicases: family matters

(2010) Margaret E Fairman-Williams et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

DNA repair defects sensitize cells to anticodon nuclease yeast killer toxins

(2010) Roland Klassen et al.   MOLECULAR GENETICS AND GENOMICS

Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS

Identification of new homologs of PD-(D/E)XK nucleases by support vector machines trained on data derived from profile-profile alignments

(2010) M. Laganeckas et al.   NUCLEIC ACIDS RESEARCH

Genomes of the T4-related bacteriophages as windows on microbial genome evolution

(2010) Vasiliy M Petrov et al.   Virology Journal

Dimeric/oligomeric DNA methyltransferases: an unfinished story

(2009) Ernst G. Malygin et al.   BIOLOGICAL CHEMISTRY

Dissection of the DNA Mimicry of the Bacteriophage T7 Ocr Protein using Chemical Modification

(2009) Augoustinos S. Stephanou et al.   JOURNAL OF MOLECULAR BIOLOGY

DNA cleavage and methylation specificity of the single polypeptide restriction–modification enzyme LlaGI

(2009) Rachel M. Smith et al.   NUCLEIC ACIDS RESEARCH

An Mrr-family nuclease motif in the single polypeptide restriction–modification enzyme LlaGI

(2009) Rachel M. Smith et al.   NUCLEIC ACIDS RESEARCH

The single polypeptide restriction–modification enzyme LlaGI is a self-contained molecular motor that translocates DNA loops

(2009) Rachel M. Smith et al.   NUCLEIC ACIDS RESEARCH

Rational engineering of type II restriction endonuclease DNA binding and cleavage specificity

(2009) Richard D. Morgan et al.   NUCLEIC ACIDS RESEARCH

Extensive DNA mimicry by the ArdA anti-restriction protein and its role in the spread of antibiotic resistance

(2009) Stephen A. McMahon et al.   NUCLEIC ACIDS RESEARCH

Type I restriction endonucleases are true catalytic enzymes

(2009) Piero R. Bianco et al.   NUCLEIC ACIDS RESEARCH

Atomic force microscopy of the EcoKI Type I DNA restriction enzyme bound to DNA shows enzyme dimerization and DNA looping

(2009) Kelly J. Neaves et al.   NUCLEIC ACIDS RESEARCH

The structure of the KlcA and ArdB proteins reveals a novel fold and antirestriction activity against Type I DNA restriction systems in vivo but not in vitro

(2009) Dimitra Serfiotis-Mitsa et al.   NUCLEIC ACIDS RESEARCH

The MmeI family: type II restriction–modification enzymes that employ single-strand modification for host protection

(2009) Richard D. Morgan et al.   NUCLEIC ACIDS RESEARCH

Cleavage of a model DNA replication fork by a Type I restriction endonuclease

(2009) Ken Ishikawa et al.   NUCLEIC ACIDS RESEARCH

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2009) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

The fragment structure of a putative HsdR subunit of a type I restriction enzyme from Vibrio vulnificus YJ016: implications for DNA restriction and translocation activity

(2009) Nguyen To Uyen et al.   NUCLEIC ACIDS RESEARCH

Crystallization and preliminary X-ray diffraction analysis of the HsdR subunit of a putative type I restriction enzyme fromVibrio vulnificusYJ016

(2008) Nguyen To Uyen et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

Functional Analysis of MmeI from Methanol Utilizer Methylophilus methylotrophus, a Subtype IIC Restriction-Modification Enzyme Related to Type I Enzymes

(2008) J. Nakonieczna et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A mutational analysis of DNA mimicry by ocr, the gene 0.3 antirestriction protein of bacteriophage T7

(2008) Augoustinos S. Stephanou et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Motor step size and ATP coupling efficiency of the dsDNA translocase EcoR124I

(2008) Ralf Seidel et al.   EMBO JOURNAL

Stress induces tRNA cleavage by angiogenin in mammalian cells

(2008) Hanjiang Fu et al.   FEBS LETTERS

The Orf18 Gene Product from Conjugative Transposon Tn916 Is an ArdA Antirestriction Protein that Inhibits Type I DNA Restriction–Modification Systems

(2008) Dimitra Serfiotis-Mitsa et al.   JOURNAL OF MOLECULAR BIOLOGY

Structure of the motor subunit of type I restriction-modification complex EcoR124I

(2008) Mikalai Lapkouski et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

MmeI: a minimal Type II restriction-modification system that only modifies one DNA strand for host protection

(2008) Richard D. Morgan et al.   NUCLEIC ACIDS RESEARCH

Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses

(2008) Jerzy Orlowski et al.   NUCLEIC ACIDS RESEARCH

The structure of M.EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction protein

(2008) Christopher K. Kennaway et al.   NUCLEIC ACIDS RESEARCH

Restriction Endonuclease Inhibitor IPI* of Bacteriophage T4: A Novel Structure for a Dedicated Target

(2007) Dalin Rifat et al.   JOURNAL OF MOLECULAR BIOLOGY

Analysis of type I restriction modification systems in the Neisseriaceae: genetic organization and properties of the gene products

(2003) Andrzej Piekarowicz et al.   MOLECULAR MICROBIOLOGY