Twelve Years into Genomic Selection in Forest Trees: Climbing the Slope of Enlightenment of Marker Assisted Tree Breeding

Development and Validation of a 36K SNP Array for Radiata Pine (Pinus radiata D.Don)

(2022) Natalie Graham et al.   Forests

Metadata analysis indicates biased estimation of genetic parameters and gains using conventional pedigree information instead of genomic-based approaches in tree breeding

(2022) Jean Beaulieu et al.   Scientific Reports

The Modern Plant Breeding Triangle: Optimizing the Use of Genomics, Phenomics, and Enviromics Data

(2021) Jose Crossa et al.   Frontiers in Plant Science

Precise high-throughput online near-infrared spectroscopy assay to determine key cell wall features associated with sugarcane bagasse digestibility

(2021) Xinru Li et al.   Biotechnology for Biofuels

A genome‐wide SNP genotyping resource for tropical pine tree species

(2021) Colin Jackson et al.   Molecular Ecology Resources

Genomic relationship–based genetic parameters and prospects of genomic selection for growth and wood quality traits in Eucalyptus benthamii

(2021) João Gabriel Zanon Paludeto et al.   Tree Genetics & Genomes

Genomic prediction in family bulks using different traits and cross-validations in pine

(2021) Esteban F Rios et al.   G3-Genes Genomes Genetics

Toward genomic selection in Pinus taeda : Integrating resources to support array design in a complex conifer genome

(2021) Madison Caballero et al.   Applications in Plant Sciences

Accelerating Eucalyptus breeding strategies through top grafting applied to young seedlings

(2021) Carla Aparecida de Oliveira Castro et al.   INDUSTRIAL CROPS AND PRODUCTS

Achievements and Challenges of Genomics-Assisted Breeding in Forest Trees: From Marker-Assisted Selection to Genome Editing

(2021) Sunny Ahmar et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Taming the massive genome of Scots pine with PiSy50k, a new genotyping array for conifer research

(2021) Chedly Kastally et al.   PLANT JOURNAL

An Axiom SNP genotyping array for Douglas-fir

(2020) Glenn T. Howe et al.   BMC GENOMICS

Genomic prediction for hastening and improving efficiency of forward selection in conifer polycross mating designs: an example from white spruce

(2020) Patrick R. N. Lenz et al.   HEREDITY

Conventional versus genomic selection for white spruce improvement: a comparison of costs and benefits of plantations on Quebec public lands

(2020) Vincent Chamberland et al.   Tree Genetics & Genomes

Reinventing quantitative genetics for plant breeding: something old, something new, something borrowed, something BLUE

(2020) Rex Bernardo   HEREDITY

Current status of genomic evaluation

(2020) Ignacy Misztal et al.   JOURNAL OF ANIMAL SCIENCE

Expected benefits of genomic selection for growth and wood quality traits in Eucalyptus grandis

(2020) Makobatjatji M. Mphahlele et al.   Tree Genetics & Genomes

Preservation of Genetic Variation in a Breeding Population for Long-Term Genetic Gain

(2020) David Vanavermaete et al.   G3-Genes Genomes Genetics

Enviromics in breeding: applications and perspectives on envirotypic-assisted selection

(2020) Rafael T. Resende et al.   THEORETICAL AND APPLIED GENETICS

SNP Genotyping with Target Amplicon Sequencing Using a Multiplexed Primer Panel and Its Application to Genomic Prediction in Japanese Cedar, Cryptomeria japonica (L.f.) D.Don

(2020) Soichiro Nagano et al.   Forests

Development of a highly efficient 50K single nucleotide polymorphism genotyping array for the large and complex genome of Norway spruce ( Picea abies L. Karst) by whole genome resequencing and its transferability to other spruce species

(2020) Carolina Bernhardsson et al.   Molecular Ecology Resources

Improving genomic prediction of growth and wood traits in Eucalyptus using phenotypes from non-genotyped trees by single-step GBLUP

(2019) Eduardo P. Cappa et al.   PLANT SCIENCE

Multi‐trait genomic selection for weevil resistance, growth, and wood quality in Norway spruce

(2019) Patrick R.N. Lenz et al.   Evolutionary Applications

A Comparison of Mainstream Genotyping Platforms for the Evaluation and Use of Barley Genetic Resources

(2019) Benoit Darrier et al.   Frontiers in Plant Science

Quantitative genetic parameters for growth and wood properties in Eucalyptus “urograndis” hybrid using near-infrared phenotyping and genome-wide SNP-based relationships

(2019) Bruno Marco de Lima et al.   PLoS One

Low coverage whole genome sequencing enables accurate assessment of common variants and calculation of genome-wide polygenic scores

(2019) Julian R. Homburger et al.   Genome Medicine

Genomic-based multiple-trait evaluation in Eucalyptus grandis using dominant DArT markers

(2018) Eduardo P. Cappa et al.   PLANT SCIENCE

Genomic relationships reveal significant dominance effects for growth in hybrid Eucalyptus

(2018) Biyue Tan et al.   PLANT SCIENCE

Very low depth whole genome sequencing in complex trait association studies

(2018) Arthur Gilly et al.   BIOINFORMATICS

Expected benefit of genomic selection over forward selection in conifer breeding and deployment

(2018) Yongjun Li et al.   PLoS One

Phenomic Selection Is a Low-Cost and High-Throughput Method Based on Indirect Predictions: Proof of Concept on Wheat and Poplar

(2018) Renaud Rincent et al.   G3-Genes Genomes Genetics

Quantitative Genetics and Genomics Converge to Accelerate Forest Tree Breeding

(2018) Dario Grattapaglia et al.   Frontiers in Plant Science

Enhancing genomic prediction with genome-wide association studies in multiparental maize populations

(2017) Y Bian et al.   HEREDITY

Assessing the expected response to genomic selection of individuals and families in Eucalyptus breeding with an additive-dominant model

(2017) R T Resende et al.   HEREDITY

Genotype by environment interactions in forest tree breeding: review of methodology and perspectives on research and application

(2017) Yongjun Li et al.   Tree Genetics & Genomes

Genomic Selection in Plant Breeding: Methods, Models, and Perspectives

(2017) José Crossa et al.   TRENDS IN PLANT SCIENCE

Single-Step BLUP with Varying Genotyping Effort in Open-Pollinated Picea glauca

(2017) Blaise Ratcliffe et al.   G3-Genes Genomes Genetics

Performance of genomic prediction within and across generations in maritime pine

(2016) Jérôme Bartholomé et al.   BMC GENOMICS

Evaluation of the utility of gene expression and metabolic information for genomic prediction in maize

(2016) Zhigang Guo et al.   THEORETICAL AND APPLIED GENETICS

Bandwagons I, too, have known

(2016) Rex Bernardo   THEORETICAL AND APPLIED GENETICS

A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240Eucalyptustree genomes across 12 species

(2015) Orzenil B. Silva-Junior et al.   NEW PHYTOLOGIST

Unraveling Additive from Nonadditive Effects Using Genomic Relationship Matrices

(2014) Patricio R. Muñoz et al.   GENETICS

Accuracy of genomic selection models in a large population of open-pollinated families in white spruce

(2014) J Beaulieu et al.   HEREDITY

Genomic selection in forest tree breeding: the concept and an outlook to the future

(2014) Fikret Isik   NEW FORESTS

Training set optimization under population structure in genomic selection

(2014) Julio Isidro et al.   THEORETICAL AND APPLIED GENETICS

Development of high-density SNP genotyping arrays for white spruce (Picea glauca) and transferability to subtropical and nordic congeners

(2013) Nathalie Pavy et al.   Molecular Ecology Resources

A 34K SNP genotyping array forPopulus trichocarpa: Design, application to the study of natural populations and transferability to otherPopulusspecies

(2013) A. Geraldes et al.   Molecular Ecology Resources

Chemical Variation in a Dominant Tree Species: Population Divergence, Selection and Genetic Stability across Environments

(2013) Julianne M. O’Reilly-Wapstra et al.   PLoS One

Integrating environmental covariates and crop modeling into the genomic selection framework to predict genotype by environment interactions

(2013) Nicolas Heslot et al.   THEORETICAL AND APPLIED GENETICS

Applied Animal Genomics: Results from the Field

(2013) Alison L. Van Eenennaam et al.   Annual Review of Animal Biosciences

Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers

(2012) Juan Burgueño et al.   CROP SCIENCE

The Effect of Linkage Disequilibrium and Family Relationships on the Reliability of Genomic Prediction

(2012) Y. C. J. Wientjes et al.   GENETICS

Extremely low-coverage sequencing and imputation increases power for genome-wide association studies

(2012) Bogdan Pasaniuc et al.   NATURE GENETICS

Genomic and metabolic prediction of complex heterotic traits in hybrid maize

(2012) Christian Riedelsheimer et al.   NATURE GENETICS

Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees

(2012) Marcos D. V. Resende et al.   NEW PHYTOLOGIST

SNP markers trace familial linkages in a cloned population of Pinus taeda—prospects for genomic selection

(2012) Jaime Zapata-Valenzuela et al.   Tree Genetics & Genomes

Efficiency of genomic selection with models including dominance effect in the context of Eucalyptus breeding

(2012) Marie Denis et al.   Tree Genetics & Genomes

THE QTN PROGRAM AND THE ALLELES THAT MATTER FOR EVOLUTION: ALL THAT'S GOLD DOES NOT GLITTER

(2011) Matthew V. Rockman   EVOLUTION

Correspondence between performance of Eucalyptus spp trees selected from family and clonal tests

(2011) C.A.F. Reis et al.   GENETICS AND MOLECULAR RESEARCH

FAQ for genomic selection

(2011) I. Misztal   JOURNAL OF ANIMAL BREEDING AND GENETICS

Long-term impacts of genome-enabled selection

(2011) Nanye Long et al.   JOURNAL OF APPLIED GENETICS

Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments

(2011) M. F. R. Resende et al.   NEW PHYTOLOGIST

Prospects for genomic selection in conifer breeding: a simulation study of Cryptomeria japonica

(2011) Hiroyoshi Iwata et al.   Tree Genetics & Genomes

Rapid Genomic Characterization of the Genus Vitis

(2010) Sean Myles et al.   PLoS One

Genomic selection in forest tree breeding

(2010) Dario Grattapaglia et al.   Tree Genetics & Genomes

Genomics of growth traits in forest trees

(2009) Dario Grattapaglia et al.   CURRENT OPINION IN PLANT BIOLOGY

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE

The genetics of quantitative traits: challenges and prospects

(2009) Trudy F. C. Mackay et al.   NATURE REVIEWS GENETICS

Performance of Genomic Selection in Mice

(2008) A. Legarra et al.   GENETICS

Technical note: Prediction of breeding values using marker-derived relationship matrices

(2008) B. J. Hayes et al.   JOURNAL OF ANIMAL SCIENCE