Evaluation of the utility of gene expression and metabolic information for genomic prediction in maize

Prediction of Plant Height inArabidopsis thalianaUsing DNA Methylation Data

(2015) Yaodong Hu et al.   GENETICS

Assessment of Genetic Heterogeneity in Structured Plant Populations Using Multivariate Whole-Genome Regression Models

(2015) C. Lehermeier et al.   GENETICS

Modeling Epistasis in Genomic Selection

(2015) Yong Jiang et al.   GENETICS

Prediction of Plant Height inArabidopsis thalianaUsing DNA Methylation Data

(2015) Yaodong Hu et al.   GENETICS

Modeling Epistasis in Genomic Selection

(2015) Yong Jiang et al.   GENETICS

Marker-Based Estimation of Heritability in Immortal Populations

(2014) Willem Kruijer et al.   GENETICS

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

(2014) Wei Chen et al.   NATURE GENETICS

Deducing Hybrid Performance from Parental Metabolic Profiles of Young Primary Roots of Maize by Using a Multivariate Diallel Approach

(2014) Kristen Feher et al.   PLoS One

The impact of population structure on genomic prediction in stratified populations

(2014) Zhigang Guo et al.   THEORETICAL AND APPLIED GENETICS

Training set optimization under population structure in genomic selection

(2014) Julio Isidro et al.   THEORETICAL AND APPLIED GENETICS

Genome Wide Association Studies Using a New Nonparametric Model Reveal the Genetic Architecture of 17 Agronomic Traits in an Enlarged Maize Association Panel

(2014) Ning Yang et al.   PLoS Genetics

Genomic BLUP Decoded: A Look into the Black Box of Genomic Prediction

(2013) D. Habier et al.   GENETICS

Mapping Quantitative Trait Loci by Controlling Polygenic Background Effects

(2013) S. Xu   GENETICS

Pitfalls of predicting complex traits from SNPs

(2013) Naomi R. Wray et al.   NATURE REVIEWS GENETICS

Expression quantitative trait loci: present and future

(2013) A. C. Nica et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

RNA sequencing reveals the complex regulatory network in the maize kernel

(2013) Junjie Fu et al.   Nature Communications

Genomewide Selection versus Marker-assisted Recurrent Selection to Improve Grain Yield and Stover-quality Traits for Cellulosic Ethanol in Maize

(2012) Jon M. Massman et al.   CROP SCIENCE

Lessons from eQTL mapping studies: non-coding regions and their role behind natural phenotypic variation in plants

(2012) Francisco A Cubillos et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide selection in cassava

(2012) Eder Jorge de Oliveira et al.   EUPHYTICA

Whole-Genome Regression and Prediction Methods Applied to Plant and Animal Breeding

(2012) G. de los Campos et al.   GENETICS

Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments

(2012) Shuichi Matsuda et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels

(2012) Hui Li et al.   NATURE GENETICS

Genomic and metabolic prediction of complex heterotic traits in hybrid maize

(2012) Christian Riedelsheimer et al.   NATURE GENETICS

Using Whole-Genome Sequence Data to Predict Quantitative Trait Phenotypes in Drosophila melanogaster

(2012) Ulrike Ober et al.   PLoS Genetics

Genome-wide expression quantitative trait loci (eQTL) analysis in maize

(2011) Beth Holloway et al.   BMC GENOMICS

Genomic Selection Accuracy for Grain Quality Traits in Biparental Wheat Populations

(2011) Elliot L. Heffner et al.   CROP SCIENCE

Partial least squares regression, support vector machine regression, and transcriptome-based distances for prediction of maize hybrid performance with gene expression data

(2011) Junjie Fu et al.   THEORETICAL AND APPLIED GENETICS

Evaluation of genome-wide selection efficiency in maize nested association mapping populations

(2011) Zhigang Guo et al.   THEORETICAL AND APPLIED GENETICS

Genome-based prediction of testcross values in maize

(2011) Theresa Albrecht et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Combining Genome-Wide Association Mapping and Transcriptional Networks to Identify Novel Genes Controlling Glucosinolates in Arabidopsis thaliana

(2011) Eva K. F. Chan et al.   PLOS BIOLOGY

Beyond Missing Heritability: Prediction of Complex Traits

(2011) Robert Makowsky et al.   PLoS Genetics

Prediction of Genetic Values of Quantitative Traits in Plant Breeding Using Pedigree and Molecular Markers

(2010) J. Crossa et al.   GENETICS

A Commentary on ‘Common SNPs Explain a Large Proportion of the Heritability for Human Height’ by Yang et al. (2010)

(2010) Peter M. Visscher et al.   Twin Research and Human Genetics

Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case Study

(2009) S. Zhong et al.   GENETICS

Large-area rice yield forecasting using satellite imageries

(2009) Yi-Ping Wang et al.   International Journal of Applied Earth Observation and Geoinformation

Improved Heterosis Prediction by Combining Information on DNA- and Metabolic Markers

(2009) Tanja Gärtner et al.   PLoS One

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Metabolomics-assisted breeding: a viable option for crop improvement?

(2008) Alisdair R. Fernie et al.   TRENDS IN GENETICS