Genomic selection in forest tree breeding: the concept and an outlook to the future

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

(2013) Inanc Birol et al.   BIOINFORMATICS

Genomic selection in sugar beet breeding populations

(2013) Tobias Würschum et al.   BMC GENETICS

Development of a high density 600K SNP genotyping array for chicken

(2013) Andreas Kranis et al.   BMC GENOMICS

A spruce sequence

(2013) Ronald Sederoff   NATURE

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

Prospects for genomic selection in forage plant species

(2013) Benjamin J. Hayes et al.   PLANT BREEDING

Mining conifers’ mega-genome using rapid and efficient multiplexed high-throughput genotyping-by-sequencing (GBS) SNP discovery platform

(2013) Charles Chen et al.   Tree Genetics & Genomes

Genomic Estimated Breeding Values Using Genomic Relationship Matrices in a Cloned Population of Loblolly Pine

(2013) Jaime Zapata-Valenzuela et al.   G3-Genes Genomes Genetics

Accuracy of Genomic Selection Methods in a Standard Data Set of Loblolly Pine (Pinus taeda L.)

(2012) M. F. R. Resende et al.   GENETICS

SNP markers trace familial linkages in a cloned population of Pinus taeda—prospects for genomic selection

(2012) Jaime Zapata-Valenzuela et al.   Tree Genetics & Genomes

Genomic selection in French dairy cattle

(2012) D. Boichard et al.   Animal Production Science

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Effect of different genomic relationship matrices on accuracy and scale1

(2011) C. Y. Chen et al.   JOURNAL OF ANIMAL SCIENCE

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome

(2011) Martin W. Ganal et al.   PLoS One

Breeding without Breeding: Is a Complete Pedigree Necessary for Efficient Breeding?

(2011) Yousry A. El-Kassaby et al.   PLoS One

Accuracy of genomic selection in European maize elite breeding populations

(2011) Yusheng Zhao et al.   THEORETICAL AND APPLIED GENETICS

Interactions of Fr genes and mixed-pathogen inocula in the loblolly pine-fusiform rust pathosystem

(2011) Fikret Isik et al.   Tree Genetics & Genomes

Microsatellites used to establish full pedigree in a half-sib trial and correlation between number of male strobili and paternal success

(2010) Ole K. Hansen et al.   ANNALS OF FOREST SCIENCE

Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)

(2010) A. J. Eckert et al.   GENETICS

Genome-wide association and genomic selection in animal breedingThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.

(2010) Ben Hayes et al.   GENOME

Hot topic: A unified approach to utilize phenotypic, full pedigree, and genomic information for genetic evaluation of Holstein final score1

(2010) I. Aguilar et al.   JOURNAL OF DAIRY SCIENCE

Female Reproductive Success Variation in a Pseudotsuga menziesii Seed Orchard as Revealed by Pedigree Reconstruction from a Bulk Seed Collection

(2010) Y. A. El-Kassaby et al.   JOURNAL OF HEREDITY

Association genetics of complex traits in plants

(2010) Pär K. Ingvarsson et al.   NEW PHYTOLOGIST

Impact of reconstructed pedigrees on progeny-test breeding values in red spruce

(2010) Trevor K. Doerksen et al.   Tree Genetics & Genomes

Genomic selection in forest tree breeding

(2010) Dario Grattapaglia et al.   Tree Genetics & Genomes

Breeding without breeding

(2009) YOUSRY A. El-KASSABY et al.   Genetics Research

A relationship matrix including full pedigree and genomic information

(2009) A. Legarra et al.   JOURNAL OF DAIRY SCIENCE

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE

A practical guide to methods of parentage analysis

(2009) ADAM G. JONES et al.   Molecular Ecology Resources

Establishment of a quasi-field trial in Abies nordmanniana—test of a new approach to forest tree breeding

(2009) Ole K. Hansen et al.   Tree Genetics & Genomes

Genomic selection: prediction of accuracy and maximisation of long term response

(2008) Mike Goddard   GENETICA

Array-based high-throughput DNA markers for crop improvement

(2008) P K Gupta et al.   HEREDITY

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Invited Review: Reliability of genomic predictions for North American Holstein bulls

(2008) P.M. VanRaden et al.   JOURNAL OF DAIRY SCIENCE

SNP genotyping: six technologies that keyed a revolution

(2008) Jeffrey Perkel   NATURE METHODS

Semi-automated, Membrane-Based Protocol for DNA Isolation from Plants

(2008) Natalia V. Ivanova et al.   PLANT MOLECULAR BIOLOGY REPORTER

Wild pedigrees: the way forward

(2008) J.M Pemberton   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Data and Theory Point to Mainly Additive Genetic Variance for Complex Traits

(2008) William G. Hill et al.   PLoS Genetics