Simulation‐Assisted Localized DNA Logical Circuits for Cancer Biomarkers Detection and Imaging

DNA Logic Circuits for Cancer Theranostics

(2022) Jing Chen et al.   Small

A Versatile Electrochemical Biosensor for the Detection of Circulating MicroRNA toward Non‐Small Cell Lung Cancer Diagnosis

(2022) Fanyu Meng et al.   Small

Design of Uracil-Modified DNA Nanotubes for Targeted Drug Release via DNA-Modifying Enzyme Reactions

(2022) Yingnan Deng et al.   ACS Applied Materials & Interfaces

Encoding DNA Frameworks for Amplified Multiplexed Imaging of Intracellular microRNAs

(2021) Dan Zhu et al.   ANALYTICAL CHEMISTRY

DNA framework‐engineered long‐range electrostatic interactions for DNA hybridization reactions

(2021) Zhibei Qu et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Coarse-Grained Simulations of DNA Reveal Angular Dependence of Sticky-End Binding

(2021) Nicholas M. Gravina et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Small-molecule inhibition of APE1 induces apoptosis, pyroptosis, and necroptosis in non-small cell lung cancer

(2021) Kaili Long et al.   Cell Death & Disease

Acceleration of DNA Hybridization Chain Reactions on 3D Nanointerfaces of Magnetic Particles and Their Direct Application in the Enzyme-Free Amplified Detection of microRNA

(2021) Motoi Oishi et al.   ACS Applied Materials & Interfaces

Engineering a high-efficient DNA amplifier for biosensing application based on perylene decorated Ag microflowers as novel electrochemiluminescence indicators

(2021) Fang Yang et al.   BIOSENSORS & BIOELECTRONICS

Molecular Engineering of Aptamer Self-Assemblies Increases in Vivo Stability and Targeted Recognition

(2021) Fangfang Xia et al.   ACS Nano

Determining Sequence-Dependent DNA Oligonucleotide Hybridization and Dehybridization Mechanisms Using Coarse-Grained Molecular Simulation, Markov State Models, and Infrared Spectroscopy

(2021) Michael S. Jones et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Self-resetting molecular probes for nucleic acids detection enabled by fuel dissipative systems

(2021) Na Li et al.   Nano Today

Localized DNA catalytic hairpin assembly reaction on DNA origami for tumor-associated microRNA detection and imaging in live cells

(2021) Junduan Dai et al.   SENSORS AND ACTUATORS B-CHEMICAL

Ultrasensitive electrochemical detection of microRNA based on in-situ catalytic hairpin assembly actuated DNA tetrahedral interfacial probes

(2021) Zhangcheng Fu et al.   TALANTA

Graphene Quantum Dot-Based Nanocomposites for Diagnosing Cancer Biomarker APE1 in Living Cells

(2020) Hao Zhang et al.   ACS Applied Materials & Interfaces

Environment-Recognizing DNA-Computation Circuits for the Intracellular Transport of Molecular Payloads for mRNA Imaging

(2020) Huihui Wang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

DNA-Templated Timer Probes for Multiplexed Sensing

(2020) Yingnan Deng et al.   NANO LETTERS

Intracellular Entropy‐Driven Multi‐Bit DNA Computing for Tumor Progression Discrimination

(2020) Min Bai et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A programmable polymer library that enables the construction of stimuli-responsive nanocarriers containing logic gates

(2020) Penghui Zhang et al.   Nature Chemistry

Molecular dynamics study of the recognition of ATP by nucleic acid aptamers

(2020) Ya-chen Xie et al.   NUCLEIC ACIDS RESEARCH

Design, optimization and analysis of large DNA and RNA nanostructures through interactive visualization, editing and molecular simulation

(2020) Erik Poppleton et al.   NUCLEIC ACIDS RESEARCH

Design of hidden thermodynamic driving for non-equilibrium systems via mismatch elimination during DNA strand displacement

(2020) Natalie E. C. Haley et al.   Nature Communications

DNA Tetrahedra Modules as Versatile Optical Sensing Platforms for Multiplexed Analysis of miRNAs, Endonucleases, and Aptamer–Ligand Complexes

(2020) Zhixin Zhou et al.   ACS Nano

Proteomics reveals a therapeutic vulnerability via the combined blockade of APE1 and autophagy in lung cancer A549 cells

(2020) Shu-Ting Pan et al.   BMC CANCER

Understanding DNA interactions in crowded environments with a coarse-grained model

(2020) Fan Hong et al.   NUCLEIC ACIDS RESEARCH

Rational Design of DNA Framework‐Based Hybrid Nanomaterials for Anticancer Drug Delivery

(2020) Congshan Wang et al.   Small

Tailoring the Mechanical Stiffness of DNA Nanostructures Using Engineered Defects

(2019) Chanseok Lee et al.   ACS Nano

Real-Time Observation of Superstructure-Dependent DNA Origami Digestion by DNase I Using High-Speed Atomic Force Microscopy

(2019) Saminathan Ramakrishnan et al.   CHEMBIOCHEM

Improved Sensitivity of Intramolecular Strand Displacement Based on Localization of Probes

(2019) Seung Won Shin et al.   ANALYTICAL CHEMISTRY

Upconversion Luminescence-Activated DNA Nanodevice for ATP Sensing in Living Cells

(2018) Jian Zhao et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Simultaneous and stoichiometric purification of hundreds of oligonucleotides

(2018) Alessandro Pinto et al.   Nature Communications

Multi-Stimuli-Responsive Polymer Particles, Films, and Hydrogels for Drug Delivery

(2018) Xiao Fu et al.   Chem

DNA bipedal motor walking dynamics: an experimental and theoretical study of the dependency on step size

(2017) Dinesh C Khara et al.   NUCLEIC ACIDS RESEARCH

Extracellular ATP a New Player in Cancer Metabolism: NSCLC Cells Internalize ATP In Vitro and In Vivo Using Multiple Endocytic Mechanisms

(2016) Y. Qian et al.   MOLECULAR CANCER RESEARCH

G-Quadruplexes Light up Localized DNA Circuits

(2016) Oscar Mendoza et al.   NANO LETTERS

A microRNA-activated molecular machine for non-enzymatic target recycling amplification detection of microRNA from cancer cells

(2015) Xin Li et al.   CHEMICAL COMMUNICATIONS

Influence of the single-strand linker composition on the structural/dynamical properties of a truncated octahedral DNA nano-cage family

(2014) Federico Iacovelli et al.   BIOPOLYMERS

MicroRNA-141 promotes the proliferation of non-small cell lung cancer cells by regulating expression of PHLPP1 and PHLPP2

(2014) Zhoufang Mei et al.   FEBS LETTERS

Highly parallel oligonucleotide purification and functionalization using reversible chemistry

(2011) Kerri T. York et al.   NUCLEIC ACIDS RESEARCH