Influence of the single-strand linker composition on the structural/dynamical properties of a truncated octahedral DNA nano-cage family

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

(2013) Sander Pronk et al.   BIOINFORMATICS

Self-Assembly of DNA Rings from Scaffold-Free DNA Tiles

(2013) Yang Yang et al.   NANO LETTERS

Structural Dynamics of Human Telomeric G-Quadruplex Loops Studied by Molecular Dynamics Simulations

(2013) Hong Zhu et al.   PLoS One

Magnesium-free self-assembly of multi-layer DNA objects

(2012) Thomas G. Martin et al.   Nature Communications

An overview of the Amber biomolecular simulation package

(2012) Romelia Salomon-Ferrer et al.   Wiley Interdisciplinary Reviews-Computational Molecular Science

Simulative Analysis of a Truncated Octahedral DNA Nanocage Family Indicates the Single-Stranded Thymidine Linkers as the Major Player for the Conformational Variability

(2011) Francesco Oteri et al.   Journal of Physical Chemistry C

Multilayer DNA Origami Packed on Hexagonal and Hybrid Lattices

(2011) Yonggang Ke et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA

(2011) J. S. Mitchell et al.   NUCLEIC ACIDS RESEARCH

Structure of Nanoscale Truncated Octahedral DNA Cages: Variation of Single-Stranded Linker Regions and Influence on Assembly Yields

(2010) Cristiano Luis Pinto Oliveira et al.   ACS Nano

Self-assembly of three-dimensional DNA nanostructures and potential biological applications

(2010) Pik Kwan Lo et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Deciphering the Structural Properties That Confer Stability to a DNA Nanocage

(2009) Mattia Falconi et al.   ACS Nano

Icosahedral DNA Nanocapsules by Modular Assembly

(2009) Dhiraj Bhatia et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Erratum: Self-assembly of DNA into nanoscale three-dimensional shapes

(2009) Shawn M. Douglas et al.   NATURE

From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal

(2009) Jianping Zheng et al.   NATURE

Folding DNA into Twisted and Curved Nanoscale Shapes

(2009) H. Dietz et al.   SCIENCE

MD Simulations of Papillomavirus DNA-E2 Protein Complexes Hints at a Protein Structural Code for DNA Deformation

(2008) M. Falconi et al.   BIOPHYSICAL JOURNAL

Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?

(2008) Jean-François Taly et al.   BMC BIOINFORMATICS

Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra

(2008) Yu He et al.   NATURE